Difference between revisions of "Part:BBa K5398610:Experience"

Revision as of 03:39, 29 September 2024 (view source) Jinmengliu (Talk | contribs) ← Older edit		Revision as of 04:10, 29 September 2024 (view source) Jinmengliu (Talk | contribs) Newer edit →
Line 1:		Line 1:
−	===Applications of BBa_K5398601===	+	===Applications of BBa_K5398610===
	<p>We use the plasmid pET-PC-SUMO-TyrVs to express the tyrosinase TyrVs(BBa_K5398600) which can oxidize tyrosine residues in TRn4-mfp5(BBa_K5398020) to L-DOPA,thereby endowing it with adhesion ability.</p>		<p>We use the plasmid pET-PC-SUMO-TyrVs to express the tyrosinase TyrVs(BBa_K5398600) which can oxidize tyrosine residues in TRn4-mfp5(BBa_K5398020) to L-DOPA,thereby endowing it with adhesion ability.</p>
	===Characterization===		===Characterization===

---

Revision as of 04:10, 29 September 2024

Applications of BBa_K5398610

We use the plasmid pET-PC-SUMO-TyrVs to express the tyrosinase TyrVs(BBa_K5398600) which can oxidize tyrosine residues in TRn4-mfp5(BBa_K5398020) to L-DOPA,thereby endowing it with adhesion ability.

Characterization

Plasmid Construction

We considered cloning TyrVs into the pET-PC-SUMO vector to explore the potential for enhancing its expression level. We constructed the pET-PC-SUMO-TyrVs vector and transformed it into E. coliBL21(DE3).

Protein expression

a single colony from a freshly streaked plate of the cells was cultured in 5 mL of LB medium with 25 μg/mL Ampicillin at 37℃ overnight. The secondary cultures were prepared with 1% inoculum in 50 mL of LB medium with 25 μg/mL Ampicillin. Cultures were then incubated at 37℃ and 200 rpm until the optical density at 600 nm (OD₆₀₀) reached 0.6–0.8. 1 mM IPTG was added to induce production of recombinant proteins and cultures were further cultivated at 16℃ and 200 rpm for 20 h. The cells were collected by centrifugation at 6000 ×g at 4℃ for 20 min.The recombinant cells were harvested by centrifugation and re-suspension in lysis buffer(10 mM imidazole, 50 mM Tris-HCl, 500 mM NaCl, pH 8.0)and lysed on ice by sonication.Sonicated samples were centrifuged at 12,000 ×g at 4 ◦C for 20 min to obtain insoluble and soluble fractions.After protein extraction, different proteins were separated by SDS-PAGE and stained with Coomassie Brilliant Blue.

Western blotting

Western bolotting revealed that after induction with IPTG, TyrVs was primarily expressed in its soluble form.

We purified SUMO-TyrVs using a HiTrap Ni-NTA column. The purified protein was verified by SDS-PAGE and was found to be present in the 50 mM imidazole elution fraction.

Enzyme activity test

We dialyzed the extracted SUMO-TyrVs for 24 hours, followed by diluting it 10,000-fold for enzymatic activity assays. In a 96 Well Cell Culture Plates, we prepared different concentrations of tyrosine and L-DOPA solution, added the diluted SUMO-TyrVs, and measured the change in OD475 over the first 5 minutes using a microplate reader.

The data were processed to generate a Michaelis-Menten curve and a Lineweaver-Burk plot. The experiment of enzymatic reaction from tyrosine to dopaquinone was conducted at 37°C with an enzyme concentration of 0.1 μg/mL. The calculated Michaelis constant (Km) and maximum velocity (Vmax) were 456.8 μmol/L and 0.31 μmol·L^-1·s^-1, respectively. The experiment of enzymatic reaction from L-DOPA to dopaquinone was conducted at 37°C with an enzyme concentration of 0.2 μg/mL. The calculated Michaelis constant (Km) and maximum velocity (Vmax) were 8787 μmol/L and 0.86 μmol·L^-1·s^-1, respectively.

Mathematical modeling Analysis

Tyrosinase exhibits dual catalytic properties, capable of catalyzing the conversion of tyrosine to L-DOPA and L-DOPA to dopaquinone. We analyzed through mathematical modeling to determine how to maximize the oxidation of tyrosine to L-DOPA. We selected multiple sets of parameters for fitting, and the goodness of fit $R ^ 2 $was 0.9962, indicating a good fitting effect. We incorporated appropriate fitting parameters into the established model and determined that the optimal reaction time is approximately 130 seconds, at which point the production of L-DOPA reaches its peak. To demonstrate that the reaction can proceed stably under conventional conditions, we introduced perturbations in each reaction channel.Under different disturbance conditions, the trend of dopamine quantity changes is similar, and the yield fluctuation is small, our reaction system has strong environmental adaptability and stability.