Difference between revisions of "Part:BBa K5267045"

 
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<partinfo>BBa_K5267045 short</partinfo>
 
<partinfo>BBa_K5267045 short</partinfo>
  
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NFAT was used as a fluorescence reporting pathway for calcium ion concentration response elements.
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Transpose and respond to calcium ion signals
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
 
===Usage and Biology===
 
===Usage and Biology===
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<partinfo>BBa_K5267045 parameters</partinfo>
 
<partinfo>BBa_K5267045 parameters</partinfo>
 
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===Profile===
 +
Name: P_6*NFAT->IgK->Nluc->bGH_polyA
 +
<br>Base Pairs: 1097bp
 +
<br>Origin: Homo sapiens
 +
<br>Properties: The transformation of calcium ion concentration is reported by fluorescence
 +
 +
 +
===Usage and Biology===
 +
At present, some people have successfully designed a series of repetitive pseudo-palindromic NFAT reaction element guided by nano-luciferase reporter gene system[1].
 +
<br>We developed a series of Ca2-induced NanoLuc reporting systems based on Ca2+ dependent activation of dimer NFAT to monitor the effects of increased Ca2+ concentration in downstream pathways following melatonin receptor response on cells. (figure. 1)
 +
<br>The system is divided into two parts: the signal response element (encoded by [https://parts.igem.org/Part:BBa_K5267007 Part:BBa K5267007]) and the detection report element (encoded by [https://parts.igem.org/Part:BBa_K2728003 Part:BBa_K2728003]).
 +
<br>HEK293 cells were co-transfected with a newly designed NanoLuc reporter expression plasmid to construct a NFAT response element (RE) -directed Nanoluc reporting system. With the NanoLuc reporter gene, we can detect the activation of the NFAT signaling pathway.[2]
 +
<html>
 +
 +
<figure class="figure">
 +
<div style="width=100%;height=auto;align-items:center">
 +
<img src="https://static.igem.wiki/teams/5267/i-m-zhangrenjie/8.jpg" class="figure-img img-fluid rounded"  height="100px">
 +
 +
</figure>
 +
 +
</html>
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<br>'''Figure 1. Construction of a pseudo-palindromic NFAT-response element (RE)-directed Nanoluc reporter system.'''
 +
 +
===Special design===
 +
In order to evaluate the biological implications of heightened intracellular calcium ion (Ca2+) levels, we have engineered a suite of Ca2+-responsive NanoLuc-reporting constructs predicated on the Ca2+-dependent engagement of nuclear factors of activated T cells (NFAT) dimers (Figure 1).
 +
 +
<br>Given the subdued transcriptional impact of an isolated response element, it is a common practice to introduce multiple tandem iterations of said element into the genomic locus proximal to the reporter gene, thereby amplifying the efficacy of the signaling cascade initiation.[1]
 +
 +
<br>The aforementioned reporter constructs incorporate a variable number of tandem repeats (1x, 5x, 6x, and 7x) derived from the NFAT response element (NFAT-RE) within the interleukin-4 (IL4) promoter sequence (5'-TACATTGGAAATTTTTAT-3'). This particular sequence is anticipated to facilitate the transcriptional activation of the NanoLuc reporter genes (Figure 2).
 +
 +
<html>
 +
 +
<figure class="figure">
 +
<div style="width=100%;height=auto;align-items:center">
 +
<img src="https://static.igem.wiki/teams/5267/i-m-zhangrenjie/10.jpg" class="figure-img img-fluid rounded"  height="200px">
 +
 +
</figure>
 +
 +
</html>
 +
<br>'''Figure 2. Schematic representation of a new luciferase reporter.'''
 +
 +
<br>Consequently, this system offers a valuable tool for elucidating the dynamic changes within the signaling network following the activation of melatonin receptors.
 +
 +
==Function test==
 +
===Method===
 +
To substantiate the functionality of the aforementioned constructs, human embryonic kidney 293 cells (HEK293) were co-transfected with expression vectors harboring the newly engineered NanoLuc-reporter genes. The reporting system is designed to be responsive to oscillations in intracellular Ca2+ concentrations. The optimal configuration of the reporting pathway was ascertained by evaluating and comparing the relative luminescence unit (RLU) expression profiles of the NanoLuc reporter genes, thereby discerning the most efficacious design among the various constructs.
 +
 +
 +
===Results===
 +
<html>
 +
 +
<figure class="figure">
 +
<div style="width=100%;height=auto;align-items:center">
 +
<img src="https://static.igem.wiki/teams/5267/i-m-zhangrenjie/9.jpg" class="figure-img img-fluid rounded"  height="300px">
 +
 +
</figure>
 +
 +
</html>
 +
☆*: .｡. o(≧▽≦)o .｡.:*☆(╯°□°）╯︵ ┻━┻( ´･･)ﾉ(._.`)ヾ(≧▽≦*)o<(￣︶￣)↗[GO!]o(*^＠^*)o(✿◡‿◡)O(∩_∩)O(*^_^*)(´▽`ʃ♡ƪ)(≧∇≦)ﾉ(*^▽^*)a○( ＾皿＾)っHiahiahia…(￣y▽￣)╭ Ohohoho.....(〃￣︶￣)人(￣︶￣〃)o(*^▽^*)┛(☆▽☆)ㄟ(≧◇≦)ㄏヾ(＠⌒ー⌒＠)ノ( *^-^)ρ(^0^* )[[User:Renmatry|Renmatry]] ([[User talk:Renmatry|talk]])///(^v^)\\\[[User:Renmatry|Renmatry]] ([[User talk:Renmatry|talk]])( •̀ ω •́ )yHi~ o(*￣▽￣*)ブ||o(*°▽°*)o|Ю [有人吗?](o゜▽゜)o☆[BINGO!]✪ ω ✪d=====(￣▽￣*)b
 +
 +
===Reference===
 +
[1] W. Zhang, T. Takahara, T. Achiha, H. Shibata, and M. Maki, “Nanoluciferase Reporter Gene System Directed by Tandemly Repeated Pseudo-Palindromic NFAT-Response Elements Facilitates Analysis of Biological Endpoint Effects of Cellular Ca2+ Mobilization,” Int. J. Mol. Sci., vol. 19, no. 2, p. 605, Feb. 2018, doi: 10.3390/ijms19020605.
 +
<br>[2] K. A. Strait, P. K. Stricklett, R. M. Kohan, and D. E. Kohan, “Identification of Two Nuclear Factor of Activated T-cells (NFAT)-response Elements in the 5′-Upstream Regulatory Region of the ET-1 Promoter,” J. Biol. Chem., vol. 285, no. 37, pp. 28520–28528, Sep. 2010, doi: 10.1074/jbc.M110.153189.

Revision as of 17:52, 28 September 2024


P_6xNFAT->IgK->Nluc->bGH_polyA

Transpose and respond to calcium ion signals Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 340
  • 1000
    COMPATIBLE WITH RFC[1000]


Profile

Name: P_6*NFAT->IgK->Nluc->bGH_polyA
Base Pairs: 1097bp
Origin: Homo sapiens
Properties: The transformation of calcium ion concentration is reported by fluorescence


Usage and Biology

At present, some people have successfully designed a series of repetitive pseudo-palindromic NFAT reaction element guided by nano-luciferase reporter gene system[1].
We developed a series of Ca2-induced NanoLuc reporting systems based on Ca2+ dependent activation of dimer NFAT to monitor the effects of increased Ca2+ concentration in downstream pathways following melatonin receptor response on cells. (figure. 1)
The system is divided into two parts: the signal response element (encoded by Part:BBa K5267007) and the detection report element (encoded by Part:BBa_K2728003).
HEK293 cells were co-transfected with a newly designed NanoLuc reporter expression plasmid to construct a NFAT response element (RE) -directed Nanoluc reporting system. With the NanoLuc reporter gene, we can detect the activation of the NFAT signaling pathway.[2]


Figure 1. Construction of a pseudo-palindromic NFAT-response element (RE)-directed Nanoluc reporter system.

Special design

In order to evaluate the biological implications of heightened intracellular calcium ion (Ca2+) levels, we have engineered a suite of Ca2+-responsive NanoLuc-reporting constructs predicated on the Ca2+-dependent engagement of nuclear factors of activated T cells (NFAT) dimers (Figure 1).


Given the subdued transcriptional impact of an isolated response element, it is a common practice to introduce multiple tandem iterations of said element into the genomic locus proximal to the reporter gene, thereby amplifying the efficacy of the signaling cascade initiation.[1]


The aforementioned reporter constructs incorporate a variable number of tandem repeats (1x, 5x, 6x, and 7x) derived from the NFAT response element (NFAT-RE) within the interleukin-4 (IL4) promoter sequence (5'-TACATTGGAAATTTTTAT-3'). This particular sequence is anticipated to facilitate the transcriptional activation of the NanoLuc reporter genes (Figure 2).


Figure 2. Schematic representation of a new luciferase reporter.


Consequently, this system offers a valuable tool for elucidating the dynamic changes within the signaling network following the activation of melatonin receptors.

Function test

Method

To substantiate the functionality of the aforementioned constructs, human embryonic kidney 293 cells (HEK293) were co-transfected with expression vectors harboring the newly engineered NanoLuc-reporter genes. The reporting system is designed to be responsive to oscillations in intracellular Ca2+ concentrations. The optimal configuration of the reporting pathway was ascertained by evaluating and comparing the relative luminescence unit (RLU) expression profiles of the NanoLuc reporter genes, thereby discerning the most efficacious design among the various constructs.


Results

☆*: .｡. o(≧▽≦)o .｡.:*☆(╯°□°）╯︵ ┻━┻( ´･･)ﾉ(._.`)ヾ(≧▽≦*)o<(￣︶￣)↗[GO!]o(*^＠^*)o(✿◡‿◡)O(∩_∩)O(*^_^*)(´▽`ʃ♡ƪ)(≧∇≦)ﾉ(*^▽^*)a○( ＾皿＾)っHiahiahia…(￣y▽￣)╭ Ohohoho.....(〃￣︶￣)人(￣︶￣〃)o(*^▽^*)┛(☆▽☆)ㄟ(≧◇≦)ㄏヾ(＠⌒ー⌒＠)ノ( *^-^)ρ(^0^* )Renmatry (talk)///(^v^)\\\Renmatry (talk)( •̀ ω •́ )yHi~ o(*￣▽￣*)ブ||o(*°▽°*)o|Ю [有人吗?](o゜▽゜)o☆[BINGO!]✪ ω ✪d=====(￣▽￣*)b

Reference

[1] W. Zhang, T. Takahara, T. Achiha, H. Shibata, and M. Maki, “Nanoluciferase Reporter Gene System Directed by Tandemly Repeated Pseudo-Palindromic NFAT-Response Elements Facilitates Analysis of Biological Endpoint Effects of Cellular Ca2+ Mobilization,” Int. J. Mol. Sci., vol. 19, no. 2, p. 605, Feb. 2018, doi: 10.3390/ijms19020605.
[2] K. A. Strait, P. K. Stricklett, R. M. Kohan, and D. E. Kohan, “Identification of Two Nuclear Factor of Activated T-cells (NFAT)-response Elements in the 5′-Upstream Regulatory Region of the ET-1 Promoter,” J. Biol. Chem., vol. 285, no. 37, pp. 28520–28528, Sep. 2010, doi: 10.1074/jbc.M110.153189.