Difference between revisions of "Part:BBa K5115020"
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===Usage and Biology=== | ===Usage and Biology=== | ||
| − | The Ni-Fe hydrogenase is made up of six major and three auxiliary subunits. | + | The Ni-Fe hydrogenase is made up of six major and three auxiliary subunits. The former includes hoxF, hoxU, hoxY, hoxH, hoxW and hoxI, while the latter includes hypA, hypB and hypF. |
| − | + | hoxF and hoxU forms the module of NADH dehydrogenase. hoxF a hydrogenase subunit responsible for electron transport. | |
| + | The most important group in hoxF is FMN-b, which has the ability of switching electron. Under anaerobic conditions, NADH is oxidized to NAD<sup>+</sup> on the surface of hoxF subunit. Under aerobic conditions, NAD<sup>+</sup> is reduced to NADH on the surface of the hoxF subunit. Under anaerobic conditions, the electrons generated in this reaction travel through a series of processes to the hoxH, completing the final reduction of the hydrogen ion.<ref>Löscher, S., Burgdorf, T., Zebger, I., Hildebrandt, P., Dau, H., Friedrich, B., & Haumann, M. (2006). Bias from H2 Cleavage to Production and Coordination Changes at the Ni−Fe Active Site in the NAD+-Reducing Hydrogenase from Ralstonia eutropha. Biochemistry, 45(38), 11658–11665.</ref> | ||
===Characterization=== | ===Characterization=== | ||
Revision as of 03:55, 22 September 2024
hox and hyp operon
Introduction
The Ni-Fe hydrogenase we use is an enzyme that functions in vivo bidirectionally for NAD+ reduction and NADH oxidation coupled to H2 uptake and H2 production, respectively. [1] In our design, the Ni-Fe hydrogenase works mainly to restore the nickel to a zero valence, which can help reduce nickel toxicity and collect nickel particles.
Usage and Biology
The Ni-Fe hydrogenase is made up of six major and three auxiliary subunits. The former includes hoxF, hoxU, hoxY, hoxH, hoxW and hoxI, while the latter includes hypA, hypB and hypF. hoxF and hoxU forms the module of NADH dehydrogenase. hoxF a hydrogenase subunit responsible for electron transport. The most important group in hoxF is FMN-b, which has the ability of switching electron. Under anaerobic conditions, NADH is oxidized to NAD+ on the surface of hoxF subunit. Under aerobic conditions, NAD+ is reduced to NADH on the surface of the hoxF subunit. Under anaerobic conditions, the electrons generated in this reaction travel through a series of processes to the hoxH, completing the final reduction of the hydrogen ion.[2]
Characterization
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 577
Illegal BglII site found at 1395
Illegal BglII site found at 1688
Illegal BglII site found at 2230
Illegal BglII site found at 2308
Illegal BamHI site found at 2596
Illegal XhoI site found at 22
Illegal XhoI site found at 2238
Illegal XhoI site found at 2430
Illegal XhoI site found at 2803
Illegal XhoI site found at 4857
Illegal XhoI site found at 5760
Illegal XhoI site found at 6171 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 456
Illegal NgoMIV site found at 994
Illegal NgoMIV site found at 1204
Illegal NgoMIV site found at 1516
Illegal NgoMIV site found at 2896
Illegal NgoMIV site found at 3496
Illegal NgoMIV site found at 5860
Illegal AgeI site found at 2191
Illegal AgeI site found at 6658
Illegal AgeI site found at 7680 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 2012
Illegal BsaI site found at 2174
Illegal BsaI site found at 4616
Illegal BsaI.rc site found at 625
Illegal BsaI.rc site found at 1129
Illegal SapI.rc site found at 2123
References
- ↑ Teramoto, H., Shimizu, T., Suda, M., & Inui, M. (2022). Hydrogen production based on the heterologous expression of NAD+-reducing [NiFe]-hydrogenase from Cupriavidus necator in different genetic backgrounds of Escherichia coli strains. International Journal of Hydrogen Energy, 47(52), 22010–22021.
- ↑ Löscher, S., Burgdorf, T., Zebger, I., Hildebrandt, P., Dau, H., Friedrich, B., & Haumann, M. (2006). Bias from H2 Cleavage to Production and Coordination Changes at the Ni−Fe Active Site in the NAD+-Reducing Hydrogenase from Ralstonia eutropha. Biochemistry, 45(38), 11658–11665.