Difference between revisions of "Part:BBa K5043004"

 
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Encodes ring cleavage dioxygenase presumably catalysing reaction of  4,5-dihydroxypyrene to Phenanthrene-4,5-Dicarboxylate. This is the third step in pyrene biodegradation.  
 
Encodes ring cleavage dioxygenase presumably catalysing reaction of  4,5-dihydroxypyrene to Phenanthrene-4,5-Dicarboxylate. This is the third step in pyrene biodegradation.  
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This part was derived from Mycobacterium vanbaalenii Pyr-1 which is a known pyrene degrader.
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This part was derived from Mycobacterium vanbaalenii Pyr-1 which is a known pyrene degrader. [1]
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[1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06.
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 17:59, 17 August 2024


phdF from M. vanbaalenii PYR-1

Encodes ring cleavage dioxygenase presumably catalysing reaction of 4,5-dihydroxypyrene to Phenanthrene-4,5-Dicarboxylate. This is the third step in pyrene biodegradation. This part was derived from Mycobacterium vanbaalenii Pyr-1 which is a known pyrene degrader. [1]

[1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 321
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 412
    Illegal AgeI site found at 470
  • 1000
    COMPATIBLE WITH RFC[1000]