Difference between revisions of "Part:BBa K5133002"

 
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<partinfo>BBa_K5133002 short</partinfo>
 
<partinfo>BBa_K5133002 short</partinfo>
  
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TBD
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Group: <b>GEC-China (iGEM 2024, team number: #5133)</b>
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==<b>Brief introduction</b>==
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This basic part is derived from plasmid pJL1 (Addgene: #69496)<sup>[1]</sup>, including an DNA sequence of sfGFP (superfolder green fluorescent protein). The plasmid pJL1 is commonly used for the <i>in vitro</i> sfGFP expression of cell-free protein synthesis (CFPS)<sup>[2]</sup>. Hence, this part is used for the construction of composite part <bbpart>BBa_K5133004</bbpart> to demonstrate the feasibility of CFPS in our project.
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==<b>Design and characterization</b>==
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The plasmid design of this biological part is shown as <b>Figure 1</b>, assembled with iGEM standard backbone <bbpart>pSB1C3</bbpart>. To validate the correctness of DNA sequence, result of Sanger sequencing for <bbpart>BBa_K5133004</bbpart> show the successful assembly among T7 promoter (<bbpart>BBa_K5133000</bbpart>), RBS (<bbpart>BBa_K5133001</bbpart>), sfGFP (this part), and T7 terminator (<bbpart>BBa_K5133003</bbpart>). (<b>Figure 2</b>).
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<center>
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<html lang="en">
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<head>
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    <meta charset="UTF-8">
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    <meta name="viewport" content="width=device-width, initial-scale=1.0">
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    <title>Resizable Image</title>
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    <style>
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        .resizable-img1 {
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            max-width: 60%;
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            height: auto;
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        }
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    </style>
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</head>
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<body>
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    <img src="https://static.igem.wiki/teams/5133/bba-k5133002-1.jpg"  class="resizable-img1">
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</body>
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</html>
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</center>
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<center><b>Figure 1. Schematic design of this part, generated by SnapGene.</b></center>
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<center>
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<html lang="en">
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<head>
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    <meta charset="UTF-8">
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    <meta name="viewport" content="width=device-width, initial-scale=1.0">
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    <title>Resizable Image</title>
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    <style>
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        .resizable-img2 {
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            max-width: 90%;
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            height: auto;
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        }
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    </style>
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</head>
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<body>
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    <img src="https://static.igem.wiki/teams/5133/bba-k5133002-2.jpg"  class="resizable-img2">
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</body>
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</html>
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</center>
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<center><b>Figure 2. Validation of DNA sequence by Sanger sequencing, generated by SnapGene.</b></center>
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==<b>Usages</b>==
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This part is used for the construction of three composite parts: <bbpart>BBa_K5133004</bbpart> (sfGFP generator), <bbpart>BBa_K5133006</bbpart> (Microcin H47 generator), and <bbpart>BBa_K5133008</bbpart> (Microcin M generator), for CFPS in our project.
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==<b>DNA sequence (from 5' to 3')</b>==
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<font color="red">aagaaggaga</font>tatacat
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<font color="red">Red font: RBS</font>
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==<b>References</b>==
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[1] https://www.addgene.org/69496/
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[2] Ba, F. et al. Expanding the toolbox of probiotic <i>Escherichia coli</i> Nissle 1917 for synthetic biology. <b>Biotechnology Journal</b> 19, 2300327 (2024). doi: 10.1002/biot.202300327
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 07:03, 27 July 2024


sfGFP (from plasmid pJL1)

Group: GEC-China (iGEM 2024, team number: #5133)


Brief introduction

This basic part is derived from plasmid pJL1 (Addgene: #69496)[1], including an DNA sequence of sfGFP (superfolder green fluorescent protein). The plasmid pJL1 is commonly used for the in vitro sfGFP expression of cell-free protein synthesis (CFPS)[2]. Hence, this part is used for the construction of composite part BBa_K5133004 to demonstrate the feasibility of CFPS in our project.


Design and characterization

The plasmid design of this biological part is shown as Figure 1, assembled with iGEM standard backbone pSB1C3. To validate the correctness of DNA sequence, result of Sanger sequencing for BBa_K5133004 show the successful assembly among T7 promoter (BBa_K5133000), RBS (BBa_K5133001), sfGFP (this part), and T7 terminator (BBa_K5133003). (Figure 2).


Resizable Image


Figure 1. Schematic design of this part, generated by SnapGene.



Resizable Image


Figure 2. Validation of DNA sequence by Sanger sequencing, generated by SnapGene.




Usages

This part is used for the construction of three composite parts: BBa_K5133004 (sfGFP generator), BBa_K5133006 (Microcin H47 generator), and BBa_K5133008 (Microcin M generator), for CFPS in our project.


DNA sequence (from 5' to 3')

aagaaggagatatacat

Red font: RBS


References

[1] https://www.addgene.org/69496/


[2] Ba, F. et al. Expanding the toolbox of probiotic Escherichia coli Nissle 1917 for synthetic biology. Biotechnology Journal 19, 2300327 (2024). doi: 10.1002/biot.202300327


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]