Difference between revisions of "Part:BBa K4815018:Design"

 
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===Design Notes===
 
===Design Notes===
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Our Pymaker synthesized core promoter sequence is extracted through PCR, and introducing the restriction sites ofBamH I and Xho I, the same as the scaffold. The scaffold is a preserved sequence in all PYPHs. It is a structure that we learned and utilized from previous research that can link the core promoter with the codon and provide restriction sites of BamH I and Xho I which make it possible for the plasmids with the scaffold to be inserted by various core promoter sequences at ease.  The scaffold is already maintained in the plasmid framework yeast_DualReporter(AddGene: 127546),using this assay we create a promoter library that can drive the high expression of YeGFP and be used quickly for the detection of expression rate.
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<html>
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<figure><center>
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<img alt=""
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src="https://static.igem.wiki/teams/4815/wiki/fannei.png"
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width="400"
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title="">
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<figcaption>pA-core PYPH/PYPL-pT </figcaption>
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</figure>
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</html>
  
 
===Source===
 
===Source===
  
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Originated from the framework yeast_DualReporter(AddGene: 127546)
  
 
===References===
 
===References===
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[1] Liu, X., et al., Dual Fluorescent Protein (yEGFP/DsRed-Express-2) Bioassay System for Rapid Screening for Chemical Mutagens Based on RNR3 Regulation in Saccharomyces Cerevisiae. Biomed Environ Sci, 2021. 34(5): p. 421-424.

Revision as of 14:35, 12 October 2023


pDualPL1-pDual mcherry-yeGFP Low 1


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 396
    Illegal XbaI site found at 3641
    Illegal PstI site found at 964
    Illegal PstI site found at 2196
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 396
    Illegal NheI site found at 3407
    Illegal PstI site found at 964
    Illegal PstI site found at 2196
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 396
    Illegal BglII site found at 1927
    Illegal BamHI site found at 3604
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 396
    Illegal XbaI site found at 3641
    Illegal PstI site found at 964
    Illegal PstI site found at 2196
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 396
    Illegal XbaI site found at 3641
    Illegal PstI site found at 964
    Illegal PstI site found at 2196
    Illegal NgoMIV site found at 1826
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 2886
    Illegal BsaI.rc site found at 4281
    Illegal SapI site found at 3489
    Illegal SapI site found at 4772
    Illegal SapI site found at 5372
    Illegal SapI.rc site found at 2733


Design Notes

Our Pymaker synthesized core promoter sequence is extracted through PCR, and introducing the restriction sites ofBamH I and Xho I, the same as the scaffold. The scaffold is a preserved sequence in all PYPHs. It is a structure that we learned and utilized from previous research that can link the core promoter with the codon and provide restriction sites of BamH I and Xho I which make it possible for the plasmids with the scaffold to be inserted by various core promoter sequences at ease. The scaffold is already maintained in the plasmid framework yeast_DualReporter(AddGene: 127546),using this assay we create a promoter library that can drive the high expression of YeGFP and be used quickly for the detection of expression rate.

pA-core PYPH/PYPL-pT

Source

Originated from the framework yeast_DualReporter(AddGene: 127546)

References

[1] Liu, X., et al., Dual Fluorescent Protein (yEGFP/DsRed-Express-2) Bioassay System for Rapid Screening for Chemical Mutagens Based on RNR3 Regulation in Saccharomyces Cerevisiae. Biomed Environ Sci, 2021. 34(5): p. 421-424.