Difference between revisions of "Part:BBa K4805004"
WilliamZhao (Talk | contribs) |
|||
| Line 1: | Line 1: | ||
| − | |||
| − | |||
<partinfo>BBa_K4805004 short</partinfo> | <partinfo>BBa_K4805004 short</partinfo> | ||
| − | + | ==description== | |
ClSS_S532A,F441V encodes for a variant of ClSS, a santalene synthase from Clausena lansium(Genbank Accession: ADR71055.1), which possesses two site direct mutagenesis of S532A and F441V. | ClSS_S532A,F441V encodes for a variant of ClSS, a santalene synthase from Clausena lansium(Genbank Accession: ADR71055.1), which possesses two site direct mutagenesis of S532A and F441V. | ||
Our part can be a reference for other teams to perfect the pathway producing santalene from FPP. It belongs to the terpenoid part collection we have established for the production of santalol and ambrein in S. cerevisiae, which includes BBa_K4805000-BBa_K4805012. | Our part can be a reference for other teams to perfect the pathway producing santalene from FPP. It belongs to the terpenoid part collection we have established for the production of santalol and ambrein in S. cerevisiae, which includes BBa_K4805000-BBa_K4805012. | ||
| + | ==usage and biology== | ||
| + | So far, the S532A mutation has been found to enable ClSS to produce approximately 80% more santalene in E. coli. And ClSS with mutation of F441V can produce different structures of santalene with similar composition to sandalwood oil. In our project we inserted it in the genome of S. cerevisiae in order to yield santalene. Therefore, out of the demand for increased production of santalene, we instructed a yeast strain with ClSS_F441V, S5321 gene inserted. And we make a comparison of catalyzing ability between ClSS wildtype and ClSS_F441V, S532A. | ||
| + | |||
| + | ==source== | ||
| + | Clausena lansium | ||
| + | ==characterization== | ||
| + | 2023 LINKS-China chose a commonly used 106 site to insert ERG20_F96W and ClSS at the same time(Figure 1A). It is obvious that we successfully screened one positive strain out of 10 strains, which is named as Lv2s-1 (Figure 1B). Same as ClSS, ClSS_F441V, S532A was also inserted into 106 site. | ||
| − | < | + | <html> |
| − | === | + | <img src="https://static.igem.wiki/teams/4805/wiki/engineering-success/es5.png" style="width: 50vw;"> |
| + | <p style="font-size: smaller; margin-top: 10px;">Figure 5. (A) Schematic strategy of ERG20_F96W and ClSS and ClSS_F441V, S532A the integration into site 106. (B) Colony PCR results performed to screen strain Lv2s-1 and Lv2s-2.</p> | ||
| + | </html> | ||
| − | + | Then we obtained strain Lv2s-1 and Lv2s-2 which possesses ClSS and ClSS_F441V, S532A respectively. According to the GC results, it is apparent that both strains can produce santalene(Figure 2A). Using humulene as an internal standard, the yield of a-santalene in strains Lv2s-1 and Lv2s-2 was quantified as 2.513 mg/L and 1.148 mg/L, respectively. The double site mutation of ClSS not only failed to achieve the desired increase in yield, but also decreased the yield of a-santalene by about 54%. Therefore, it is more suitable to choose Lv2s-1 as our chassis cell for modification towards a santalol producer. | |
| − | + | ||
| − | + | ||
| + | <html> | ||
| + | <img src="https://static.igem.wiki/teams/4805/wiki/engineering-success/es6.png" style="width: 50vw;"> | ||
| + | <p style="font-size: smaller; margin-top: 10px;">Figure 1. (A) GC results of santalene accumulated in strain Lv2s-1 and Lv2s-2 by GC-MS. (B) MS results at 10.13 s and 10.549 s. (C) The yield comparison of santalene in different strains. </p> | ||
| + | </html> | ||
| − | + | ==reference== | |
| − | == | + | Hua G; Hu Y; Yang C; Liu D; Mao Z; Zhang L; Zhang Y; (2018) Characterization of santalene synthases using an inorganic pyrophosphatase coupled colorimetric assay, Analytical biochemistry. Available at: https://pubmed.ncbi.nlm.nih.gov/29438678/ |
| − | + | Zha, W., Zhang, F., Shao, J. et al. Rationally engineering santalene synthase to readjust the component ratio of sandalwood oil. Nat Commun 13, 2508 (2022). https://doi.org/10.1038/s41467-022-30294-8 | |
| − | + | Zhang, Jia, et al. “Sesquiterpene Synthase Engineering and Targeted Engineering of α-Santalene Overproduction in Escherichia Coli.” Journal of Agricultural and Food Chemistry, vol. 70, no. 17, 24 Apr. 2022, pp. 5377–5385, https://doi.org/10.1021/acs.jafc.2c00754.ed.ncbi.nlm.nih.gov/31940436/ | |
Revision as of 14:17, 12 October 2023
ClSS_F441V, S532A
description
ClSS_S532A,F441V encodes for a variant of ClSS, a santalene synthase from Clausena lansium(Genbank Accession: ADR71055.1), which possesses two site direct mutagenesis of S532A and F441V. Our part can be a reference for other teams to perfect the pathway producing santalene from FPP. It belongs to the terpenoid part collection we have established for the production of santalol and ambrein in S. cerevisiae, which includes BBa_K4805000-BBa_K4805012.
usage and biology
So far, the S532A mutation has been found to enable ClSS to produce approximately 80% more santalene in E. coli. And ClSS with mutation of F441V can produce different structures of santalene with similar composition to sandalwood oil. In our project we inserted it in the genome of S. cerevisiae in order to yield santalene. Therefore, out of the demand for increased production of santalene, we instructed a yeast strain with ClSS_F441V, S5321 gene inserted. And we make a comparison of catalyzing ability between ClSS wildtype and ClSS_F441V, S532A.
source
Clausena lansium
characterization
2023 LINKS-China chose a commonly used 106 site to insert ERG20_F96W and ClSS at the same time(Figure 1A). It is obvious that we successfully screened one positive strain out of 10 strains, which is named as Lv2s-1 (Figure 1B). Same as ClSS, ClSS_F441V, S532A was also inserted into 106 site.
Figure 5. (A) Schematic strategy of ERG20_F96W and ClSS and ClSS_F441V, S532A the integration into site 106. (B) Colony PCR results performed to screen strain Lv2s-1 and Lv2s-2.
Then we obtained strain Lv2s-1 and Lv2s-2 which possesses ClSS and ClSS_F441V, S532A respectively. According to the GC results, it is apparent that both strains can produce santalene(Figure 2A). Using humulene as an internal standard, the yield of a-santalene in strains Lv2s-1 and Lv2s-2 was quantified as 2.513 mg/L and 1.148 mg/L, respectively. The double site mutation of ClSS not only failed to achieve the desired increase in yield, but also decreased the yield of a-santalene by about 54%. Therefore, it is more suitable to choose Lv2s-1 as our chassis cell for modification towards a santalol producer.
Figure 1. (A) GC results of santalene accumulated in strain Lv2s-1 and Lv2s-2 by GC-MS. (B) MS results at 10.13 s and 10.549 s. (C) The yield comparison of santalene in different strains.
reference
Hua G; Hu Y; Yang C; Liu D; Mao Z; Zhang L; Zhang Y; (2018) Characterization of santalene synthases using an inorganic pyrophosphatase coupled colorimetric assay, Analytical biochemistry. Available at: https://pubmed.ncbi.nlm.nih.gov/29438678/ Zha, W., Zhang, F., Shao, J. et al. Rationally engineering santalene synthase to readjust the component ratio of sandalwood oil. Nat Commun 13, 2508 (2022). https://doi.org/10.1038/s41467-022-30294-8 Zhang, Jia, et al. “Sesquiterpene Synthase Engineering and Targeted Engineering of α-Santalene Overproduction in Escherichia Coli.” Journal of Agricultural and Food Chemistry, vol. 70, no. 17, 24 Apr. 2022, pp. 5377–5385, https://doi.org/10.1021/acs.jafc.2c00754.ed.ncbi.nlm.nih.gov/31940436/