Difference between revisions of "Part:BBa K4770031"
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===Design considerations=== | ===Design considerations=== | ||
AlgaGenix’s Level Ms are designed to have the same structure and not having to build different pieces with different positions for each transcriptional unit. Each piece has it’s own design considerations that can be looked up on the individual part’s pages. | AlgaGenix’s Level Ms are designed to have the same structure and not having to build different pieces with different positions for each transcriptional unit. Each piece has it’s own design considerations that can be looked up on the individual part’s pages. | ||
− | <partinfo> | + | <partinfo>BBa_K4770030 SequenceAndFeatures</partinfo> |
Revision as of 11:52, 12 October 2023
IPT_Isopentenyltransferase_Level_M
Contents
Description and Biology
Level Ms are the assembly of different transcriptional units into the same vector. All AlgaGenix’s Level M follow the same structure: they contain the HygroR cassette, level 1 for each gene (pCM1:NR, NiR, GS, Cp-GS, IPT or LOG), mVenus cassette, and mCherry cassette. In this case, we are using pCM1: LOG With this vector, we aim to see the effects of overexpressing LOG constitutively and at the same time normalizing the expression level depending on the insertion site of the vector (by measuring the signal of the mCherry cassette), at the same time, we will be able to see the decrease of nitrates concentration due to a higher demand of nitrates assimilation to obtain the needed N for cytokines synthesis thanks to the mVenus cassette signal.
How can this part be used
This Level M is aimed to assembled with HygroR cassette in position 4, LOG Level1 in position 5, mCherry cassette in position 6 and mVenus cassette in position 7. Should you use this part and need advice on how to use it, please do not hesitate to contact us at algagenix@gmail.com
Source of this part
Position 4: Hygro R cassette BBa_K4770016 Position 5: pCM1 LOG BBa_K4770023 Position 6: mCherry cassette BBa_K4770017 Position 7: mVenus cassette BBa_K4770025
Design considerations
AlgaGenix’s Level Ms are designed to have the same structure and not having to build different pieces with different positions for each transcriptional unit. Each piece has it’s own design considerations that can be looked up on the individual part’s pages.
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 3323
Illegal PstI site found at 4455
Illegal PstI site found at 4876
Illegal PstI site found at 4900
Illegal PstI site found at 7575
Illegal PstI site found at 9101 - 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 3323
Illegal PstI site found at 4455
Illegal PstI site found at 4876
Illegal PstI site found at 4900
Illegal PstI site found at 7575
Illegal PstI site found at 9101
Illegal NotI site found at 3203
Illegal NotI site found at 4836
Illegal NotI site found at 8837 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 5567
Illegal BamHI site found at 4195 - 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 3323
Illegal PstI site found at 4455
Illegal PstI site found at 4876
Illegal PstI site found at 4900
Illegal PstI site found at 7575
Illegal PstI site found at 9101 - 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 3323
Illegal PstI site found at 4455
Illegal PstI site found at 4876
Illegal PstI site found at 4900
Illegal PstI site found at 7575
Illegal PstI site found at 9101
Illegal NgoMIV site found at 1265
Illegal NgoMIV site found at 1447
Illegal NgoMIV site found at 3253
Illegal NgoMIV site found at 4267
Illegal NgoMIV site found at 4533
Illegal NgoMIV site found at 4937
Illegal NgoMIV site found at 4949 - 1000COMPATIBLE WITH RFC[1000]