Difference between revisions of "Part:BBa K4664011"

 
 
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<partinfo>BBa_K4664011 parameters</partinfo>
 
<partinfo>BBa_K4664011 parameters</partinfo>
 
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===Background===
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In order to determine the PLP sequence that yields the best reaction kinetics, we designed padlocks with single, double, and several mismatches at the miRNA binding sites. Padlock probes miR-223-M1-M5（Padlocks M1-M5 ）are single base pair mismatches.
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<br>
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===Design===
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Sequence:
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<br>TCAAATACACGAGATACCCTAACCATCGATCGTCGCCGTCCAGCTCGACCAACTCACCTTG
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<br>
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===Results===
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The following figure contains results for Padlocks M1-5, in comparison with Padlock-223.
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<br>
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https://static.igem.wiki/teams/4664/wiki/part/p4640011-1.png
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<br>
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<i>Figure 1. Padlocks M1-5.</i>
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<br>
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===References===
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Jin, J., Vaud, S., Zhelkovsky, A., Pósfai, J., & McReynolds, L. A. (2016). Sensitive and specific miRNA detection method using SplintR Ligase. Nucleic Acids Research, 44(13), e116. https://doi.org/10.1093/nar/gkw399
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<br>
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He, Y., Wen, Y., Tian, Z., Hart, N. T., Han, S., Hughes, S. J., & Zeng, Y. (2023b). A one-pot isothermal Cas12-based assay for the sensitive detection of microRNAs. Nature Biomedical Engineering. https://doi.org/10.1038/s41551-023-01033-1

Latest revision as of 07:18, 12 October 2023


Padlock-miR-223-M2

Padlock Padlock-miR-223 is the corresponding padlock chosen for the miR-223 biomarker.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Background

In order to determine the PLP sequence that yields the best reaction kinetics, we designed padlocks with single, double, and several mismatches at the miRNA binding sites. Padlock probes miR-223-M1-M5（Padlocks M1-M5 ）are single base pair mismatches.

Design

Sequence:
TCAAATACACGAGATACCCTAACCATCGATCGTCGCCGTCCAGCTCGACCAACTCACCTTG

Results

The following figure contains results for Padlocks M1-5, in comparison with Padlock-223.
p4640011-1.png
Figure 1. Padlocks M1-5.

References

Jin, J., Vaud, S., Zhelkovsky, A., Pósfai, J., & McReynolds, L. A. (2016). Sensitive and specific miRNA detection method using SplintR Ligase. Nucleic Acids Research, 44(13), e116. https://doi.org/10.1093/nar/gkw399
He, Y., Wen, Y., Tian, Z., Hart, N. T., Han, S., Hughes, S. J., & Zeng, Y. (2023b). A one-pot isothermal Cas12-based assay for the sensitive detection of microRNAs. Nature Biomedical Engineering. https://doi.org/10.1038/s41551-023-01033-1