Difference between revisions of "Part:BBa K4759245"
 
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<partinfo>BBa_K4759245 short</partinfo>
 
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Redox proteins and redox proteases are linked by RBS2, joining the two proteins together. The original base of the amino acid encoding PetF at position 68 is GAT, we mutated it to ATT, where the amino acid in ferredoxin is mutated from Asp to Ile.
  
 
===Usage and Biology===
 
===Usage and Biology===
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After obtaining the best redox partners PetH/PetF, we performed alanine scanning on petF to speculate which sites had a greater impact on its electron transport capacity. Finally, we found that after mutations in seven of them, the electron transport effect would change greatly, so we mutated the amino acids of these sites into other 19 amino acids by modeling, and selected 23 of them to get better results.  
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After obtaining the best redox partners PetH/PetF, we performed alanine scanning on petF to speculate which sites had a greater impact on its electron transport capacity. Finally, we found that after mutations in seven of them, the electron transport effect would change greatly, so we mutated the amino acids of these sites into other 19 amino acids by modeling and selecting 23 of them to get better results.  
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(Site-directed Mutagenesis parts can be search from BBa_K4759053 to BBa_K4759075, and constructed modeling screening for redox partners can be search from BBa_K4759076 to BBa_K4759099)
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(Site-directed Mutagenesis parts can be searched from BBa_K4759053 to BBa_K4759075, and constructed modeling screening for redox partners can be searched from BBa_K4759076 to BBa_K4759099)
  
 
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https://static.igem.wiki/teams/4759/wiki/4-9.png
 
https://static.igem.wiki/teams/4759/wiki/4-9.png
  
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Fig. 3: A:Fluorescence intensity of wild type with 23 mutants
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Fig. 3: A: Fluorescence intensity of wild type with 23 mutants
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B: Conversion of the 9 mutants with the highest fluorescence intensity with wild type
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B: Conversion of the 9 mutants with the highest fluorescence intensity with wild-type
  
 
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Latest revision as of 07:09, 12 October 2023


T7-RBS1-petH-RBS2-petF(D68I)


Redox proteins and redox proteases are linked by RBS2, joining the two proteins together. The original base of the amino acid encoding PetF at position 68 is GAT, we mutated it to ATT, where the amino acid in ferredoxin is mutated from Asp to Ile.

Usage and Biology

After obtaining the best redox partners PetH/PetF, we performed alanine scanning on petF to speculate which sites had a greater impact on its electron transport capacity. Finally, we found that after mutations in seven of them, the electron transport effect would change greatly, so we mutated the amino acids of these sites into other 19 amino acids by modeling and selecting 23 of them to get better results. (Site-directed Mutagenesis parts can be searched from BBa_K4759053 to BBa_K4759075, and constructed modeling screening for redox partners can be searched from BBa_K4759076 to BBa_K4759099)

4-7.png

Fig. 1: Fermentation of 23 mutants and control groups


We conducted control tests with the positive control group, negative control group, and wild-type strains, and finally selected 9 mutants with the highest fluorescence intensity for subsequent catalytic verification by detecting their green fluorescence intensity.

4-8.png

Fig. 2: 9 mutants + wild-type + negative control, 50 ml/250 ml system fermentation

By verifying the catalytic ability, we found that the substrate conversion of D68P was higher than that of the wild type in the nine strains with high fluorescence intensity, reaching 89.2%.

4-9.png

Fig. 3: A: Fluorescence intensity of wild type with 23 mutants B: Conversion of the 9 mutants with the highest fluorescence intensity with wild-type

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 1342
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 1342
    Illegal NotI site found at 1115
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 1342
    Illegal BglII site found at 1653
    Illegal BamHI site found at 1336
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 1342
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 1342
  • 1000
    COMPATIBLE WITH RFC[1000]