Difference between revisions of "Part:BBa K4907009"

Latest revision as of 05:16, 12 October 2023

cspA 5' UTR

Biology

pCspA

pCspA is the promoter of CspA which is a type of cold shock proteins. When E. coli is transferred to low temperatures, the cells exhibit an adaptive response to the temperature downshift. More specifically, cold shock starts the expression of a set of proteins defined as cold shock proteins which have been shown to play important roles in protein synthesis at low temperatures (1).

cspA 5’-UTR

Between the 5'end and the coding sequence is a short region that is not translated—the 5'-untranslated region or 5'-UTR. As for cspA 5’-UTR, its stability has been shown to play a major role in the cold shock expression of CspA (2). Experiments have shown that the mechanism of cspA cold-responsive element (CRE) is not related to the cspA promoter, while the 5’-UTR plays a greater role in the induction of downstream genes’ expression due to its conformational change (3).

TEE

TEE refers to translation-enhancing element. This sequence is preferentially bound by ribosomes initiating translation. So once bound to the TEE, ribosomes are rarely available to translate other mRNAs (4).

cspA 3’-UTR

Similarly, 3’-UTR is defined as the untranslated region at the 3’end of mRNA. The stability of 3’-UTR has been shown to play a major role in cspA CRE because of the interaction between mRNA 5’-UTR and 3’-UTR.

Usage and design

The XMU-China used pCspA, cspA 5’-UTR and 3’-UTR as cold-responsive elements (CRE), hoping to achieve the design of antifreeze proteins expressed at low temperatures. We were inspired by the sequences of classic pCold series plasmids and introduced the TEE sequence to promote the binding of ribosomes to the mRNA. Here, we defined the promoter pCspA (BBa_K4907008), cspA 5’-UTR (BBa_K4907009), TEE sequence (BBa_K4907011) and cspA 3’-UTR (BBa_K4907010) together as the CspA cold-responsive expression cassette (CspA CREC), which allowed the insertion of CDS of target proteins into this cassette between TEE and cspA 3’-UTR (Fig. 1). Learn more from our Design.

Characterization

Low-temperature induction

The low-temperature induction effect of CspA CREC was first characterized by GFP, which was regarded as the target protein, and the corresponding CDS was designed to be inserted into the cassette. We directly synthesized the complete pCspA-cspA 5’-UTR-TEE-gfp-cspA 3’-UTR-B0015 on pSB1C3 vector (BBa_K4907118_pSB1C3). We transformed it directly into E. coli BL21(DE3) and verified by colony PCR (lane K4907118 in Fig. 2, target fragment-1546 bp).

J23100-B0034-gfp-B0015_pSB1C3 BBa_K4907146_pSB1C3, (as a positive control group), BBa_I0500_pSB1C3 (as a negative control group) and the BBa_K4907118_pSB1C3 (as the experimental group) were characterized at 37 °C and 15 °C, respectively. As expected, the induction effect of low-temperature (15 °C) was obvious when GFP was expressed in CspA CREC, consistent with the increasing trend of the reporter's expression level at 15 °C as time progressed (Fig. 3b) but blunt changes at 37 °C (Fig. 3a). By contrast, when cultivated at 37 °C, the constitutively expressed GFP (under the control of J23100) showed a normal increasing trend of expression against time rather than a stagnant state at 15 °C, which might result from the negative influence of coldness to the bacteria. Based on this observation, although the well induction effect at 15 °C, means of alleviating the adverse impact of coldness or making the engineered bacteria more cold-adapted should be taken into account once the CspA CREC is applied at lower temperatures (such as 4 °C).

Therefore, in order to further characterize at lower temperatures, we introduced Mn-SOD (BBa_K4907132_pSB3K3) to enhance the stress resistance of the bacteria. This Mn-SOD-expressing plasmid and </partinfo>BBa_K4907118</partinfo>_pSB1C3 were co-transformed into E. coli BL21(DE3) and the correct dual-plasmid transformants were selected by chloramphenicol and kanamycin. The same characterization was performed at 4 °C. It can be seen from Fig. 4 that CspA CREC still has much stronger expression strength under the condition of 4 °C, compared to the constitutively expressed J23100. Such results also showed the excellent performance of CspA CREC as a low-temperature induction expression system when accompanied by the expression of Mn-SOD.

Leakage at high temperatures

During the characterizations of different temperatures, a relatively higher basal expression of CspA CREC was also observed, especially at 37 °C (Fig. 5), which indicated that there is an unneglected leakage of this cold-inducible expression system. For the purpose of stringent control, we have come up with some means and improvements for lowering the leakage of this CspA CREC system, resulting in various novel cold-inducible expression systems that would enrich the thermogenetic toolkits and contribute to other teams and labs (please see our Designpage for more information).

Reference 1. W. Bae, P. G. Jones, M. Inouye, CspA, the major cold shock protein of Escherichia coli, negatively regulates its own gene expression. Journal of Bacteriology 179, 7081-7088 (1997). 2. L. Fang, W. Jiang, W. Bae, M. Inouye, Promoter-independent cold-shock induction of cspA and its derepression at 37 °C by mRNA stabilization. Molecular Microbiology. 23, 355-364 (1997). 3. A. Hoynes-O'Connor, K. Hinman, L. Kirchner, T. S. Moon, De novo design of heat-repressible RNA thermosensors in E. coli. Nucleic Acids Research 43, 6166-6179 (2015). 4. G. Qing et al., Cold-shock induced high-yield protein production in Escherichia coli. Nature Biotechnology. 22, 877-882 (2004).

Sequence and Features