Difference between revisions of "Part:BBa K4907001"
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<center>Fig. 2 SDS-PAGE analysis of his-SfIBP protein. Target bands (12.2 kDa) can be observed at the position around 10 kDa.</center> | <center>Fig. 2 SDS-PAGE analysis of his-SfIBP protein. Target bands (12.2 kDa) can be observed at the position around 10 kDa.</center> | ||
====Differential Scanning Calorimetry (DSC)==== | ====Differential Scanning Calorimetry (DSC)==== | ||
− | TH is the ability to lower freezing point (T<sub>f</sub>) of water, which is defined as the gap between melting point (T<sub>m</sub>) and freezing point (T<sub>f</sub>). As Fig. 3 shows, both T<sub>m</sub> and T<sub>f</sub> of 50 | + | TH is the ability to lower freezing point (T<sub>f</sub>) of water, which is defined as the gap between melting point (T<sub>m</sub>) and freezing point (T<sub>f</sub>). As Fig. 3 shows, both T<sub>m</sub> and T<sub>f</sub> of 50 µM TmAFP solution were measured by DSC (2), then we determined the TH activity of TmAFP. |
<center>Fig. 3 DSC curve</center> | <center>Fig. 3 DSC curve</center> |
Revision as of 21:28, 11 October 2023
tmafp-his tag
Biology
TmAFP
TmAFP, found from Tenebrio molitor, is one of antifreeze proteins (AFPs) (1). It is capable to prevent liquid freezing and inhibit ice growth, which is defined as Thermal Hysteresis (TH) and ice recrystallization inhibition (IRI) respectively. Notably, TmAFP possess highest TH activity between all AFPs that have been found.
Usage
In order to measure TH and IRI activity of TmAFP, and finally verify if it is capable to solve soil frost problem, a His-tag (6×his) was added to the C-terminal of TmAFP for purification. We constructed this part and assembled it on the expression vector pET-28a(+).
Characterization
Agarose gel electrophoresis (AGE)
The constructed plasmids were transformed into E. coli BL21 Star(DE3), then the positive transforms were selected by kanamycin and confirmed by colony PCR. Target bands (465 bp) can be observed at the position around 500 bp. (Fig. 1)
SDS-PAGE
The plasmids verified by sequencing was successfully transformed into E. coli BL21 Star(DE3). After being cultivated and induced by 0.7 mM IPTG at 20 ℃,GE AKTA Prime Plus FPLC System was employed to get purified protein from the lysate supernatant. Purified protein was verified by sodium dodecyl sulfate (SDS)-12% (wt/vol) polyacrylamide gel electrophoresis (PAGE) and Coomassie blue staining. As shown in the gel image (Fig. 2), the target protein (12.2 kDa) can be observed at the position around 10 kDa on the purified protein lanes (FR), although displayed with many other protein bands together.
Differential Scanning Calorimetry (DSC)
TH is the ability to lower freezing point (Tf) of water, which is defined as the gap between melting point (Tm) and freezing point (Tf). As Fig. 3 shows, both Tm and Tf of 50 µM TmAFP solution were measured by DSC (2), then we determined the TH activity of TmAFP.
IRI
The least concentration of AFPs presenting IRI activity is defined as the end point of AFPs. It represents the IRI activity of AFPs, and can be detected by the capillary methods (3).
1. Antifreeze at soil Equal 50 µM TmAFP solution and Phosphate Buffered Saline (1 ×PBS) were added in quantitative soil to assay the ability of TmAFP to prevent soil frost.
Reference
- M. U. Sankar, B. Sanjoy, Elucidating the Sluggish Water Dynamics at the Ice-Binding Surface of the Hyperactive Tenebrio molitor Antifreeze Protein. J. Phys. Chem. B 127, 121-132 (2023).
- M. Lu et al., Differential Scanning Calorimetric and Circular Dichroistic Studies on Plant Antifreeze Proteins. J. Therm. Anal. Calorim. 67, 689-698 (2002).
- M. M. Tomczak, C. B. Marshall, J. A. Gilbert, P. L. Davies, A facile method for determining ice recrystallization inhibition by antifreeze proteins. Biochem. Biophys. Res. Commun. 311, 1041-1046 (2003).
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 202
- 1000COMPATIBLE WITH RFC[1000]