Difference between revisions of "Part:BBa K187239:Experience"
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This experience page is provided so that any user may enter their experience using this part.<BR>Please enter | This experience page is provided so that any user may enter their experience using this part.<BR>Please enter | ||
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===Applications of BBa_K187239=== | ===Applications of BBa_K187239=== | ||
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| + | Oligonucleotides were synthesized. Primers were tested using MG1655 E.coli genomic DNA as template. | ||
| + | |||
| + | This primer produced a product of the predicted size using the following reaction conditions: | ||
| + | : | ||
| + | Water: 17.05uL | ||
| + | 10x pfu buffer: 2.5uL | ||
| + | dNTPs (2mM): 2.5uL | ||
| + | DMSO: 1.2uL | ||
| + | MG1655 Genomic DNA: 0.5uL | ||
| + | Forward primer (10uM): 0.5uL | ||
| + | Reverse primer (10uM): 0.5uL | ||
| + | Pfu polymerase: 0.25uL | ||
| + | |||
| + | Total reaction volume: 25uL | ||
| + | |||
| + | Thermocycling conditions: | ||
| + | 95oC, 3min | ||
| + | 95oC, 30s | ||
| + | 56oC, 30s | ||
| + | 72oC, 3min | ||
| + | 29 cycles to step 2 | ||
| + | 72oC 2min | ||
| + | All Biobytes essential gene primers were produced using Vector NTI. Each primer's thermodynamic properties were examined using Vector NTI's hairpin and dimerzation programs. Primers were optimized to fit as many of the following criteria as possible: | ||
| + | • Find the shortest possible sequence, reducing the cost to produce the primer. | ||
| + | • Produce the highest score value possible. | ||
| + | • Produce the closest Tm's possible | ||
| + | • Produce hairpins with dG values >-5 | ||
| + | • Produce dimers with dG values >-10 | ||
| + | The following are Vector NTI statistics for this primer: | ||
| + | dG Dimer (kcal/mol): -5.2 | ||
| + | dG Hairpin (kcal/mol): 0.8 | ||
===User Reviews=== | ===User Reviews=== | ||
Latest revision as of 03:24, 20 October 2009
This experience page is provided so that any user may enter their experience using this part.
Please enter
how you used this part and how it worked out.
Applications of BBa_K187239
Oligonucleotides were synthesized. Primers were tested using MG1655 E.coli genomic DNA as template.
This primer produced a product of the predicted size using the following reaction conditions:
Water: 17.05uL 10x pfu buffer: 2.5uL dNTPs (2mM): 2.5uL DMSO: 1.2uL MG1655 Genomic DNA: 0.5uL Forward primer (10uM): 0.5uL Reverse primer (10uM): 0.5uL Pfu polymerase: 0.25uL
Total reaction volume: 25uL
Thermocycling conditions: 95oC, 3min 95oC, 30s 56oC, 30s 72oC, 3min 29 cycles to step 2 72oC 2min All Biobytes essential gene primers were produced using Vector NTI. Each primer's thermodynamic properties were examined using Vector NTI's hairpin and dimerzation programs. Primers were optimized to fit as many of the following criteria as possible: • Find the shortest possible sequence, reducing the cost to produce the primer. • Produce the highest score value possible. • Produce the closest Tm's possible • Produce hairpins with dG values >-5 • Produce dimers with dG values >-10 The following are Vector NTI statistics for this primer: dG Dimer (kcal/mol): -5.2 dG Hairpin (kcal/mol): 0.8
User Reviews
UNIQ8dc2b61e672fe111-partinfo-00000000-QINU UNIQ8dc2b61e672fe111-partinfo-00000001-QINU