Difference between revisions of "Part:BBa K4621150"
Line 3: | Line 3: | ||
<partinfo>BBa_K4621150 short</partinfo> | <partinfo>BBa_K4621150 short</partinfo> | ||
+ | ===Usage and Biology=== | ||
EctOperon contains ectA, ectB, ectC and ectD and can produce 5-Hydroxyectoine from lysine. | EctOperon contains ectA, ectB, ectC and ectD and can produce 5-Hydroxyectoine from lysine. | ||
Line 14: | Line 15: | ||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here | ||
− | + | ||
<!-- --> | <!-- --> |
Revision as of 16:08, 5 October 2023
It consists of the chi18A hypothetical promoter and EctOperon
Usage and Biology
EctOperon contains ectA, ectB, ectC and ectD and can produce 5-Hydroxyectoine from lysine.
chi18A hypothetical promoter is a whole functional sequence including the promoter of chitinase Chi18A gene, which was cloned from SCUT-3 gene. In our project, through transcriptome analysis, qPCR and other means, we found that the gene expression of chitinase Chi18A was up-regulated when SCUT-3 was in chitin medium, and we speculated that its promoter chi18A hypothetical promoter may have properties that can be induced by chitin.
We ligated the chi18A hypothetical promoter with EctOperon and overexpressed it in Streptomyces SCUT-3 using an integrated plasmid. The modified strain was inoculated in 40 mL LB medium and fermented at 40℃ and 220 rpm for 120h. The production of Ectoine and 5-Hydroxyectoin in the presence or without chitin (the first day of fermentation) was detected to evaluate the chitin inducability of the promoter. The results are shown in FIG. 1.
Fig.1 Fermentation of products with or without the addition of an inducer(chitin) (a).Ectoine (b).5-Hydroxyectoin(72h)
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 3369
- 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 3369
Illegal NotI site found at 713
Illegal NotI site found at 1598
Illegal NotI site found at 1916 - 21INCOMPATIBLE WITH RFC[21]Illegal XhoI site found at 123
Illegal XhoI site found at 895
Illegal XhoI site found at 1069 - 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 3369
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 3369
Illegal NgoMIV site found at 930
Illegal NgoMIV site found at 1336
Illegal NgoMIV site found at 1342
Illegal NgoMIV site found at 1633
Illegal NgoMIV site found at 2682
Illegal NgoMIV site found at 2874
Illegal NgoMIV site found at 3384 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 518
Illegal BsaI.rc site found at 698
Illegal BsaI.rc site found at 1480
Illegal BsaI.rc site found at 2008
Illegal BsaI.rc site found at 2263
Illegal BsaI.rc site found at 2353
Illegal BsaI.rc site found at 2428
Illegal SapI site found at 556