Difference between revisions of "Part:BBa K4579000:Design"
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===Source=== | ===Source=== | ||
| − | + | This part was sourced from pAJM.011 on AddGene (https://www.addgene.org/108529/), which originates from the paper "Escherichia coli 'Marionette' strains with 12 highly optimized small-molecule sensors" by Meyer et al., cited in the long description. pAJM.011 contains tetR and a YFP gene under inducible control by pTet. | |
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===References=== | ===References=== | ||
Revision as of 03:20, 22 September 2023
PTet* promoter + RBS
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Design Notes
When designing our inducible promoter parts derived from the 'Marionette' plasmids, we decided to create universal primers that would allow us to amplify the promoter from any of the Marionette plasmids. We chose the binding sites for these primers by creating sequence alignments between multiple Marionette plasmids on Benchling, which allowed us to see the regions of plasmid homology that flanked both the promoter and regulatory gene sequences, which differed between Marionette plasmids. One big design consideration during this process was the fact that the Marionette YFP expressing plasmids contain a BsaI site in the region just upstream of the promoter sequence. We designed our primers to create a single point mutation in order to mutate out this illegal BsaI site.
Source
This part was sourced from pAJM.011 on AddGene (https://www.addgene.org/108529/), which originates from the paper "Escherichia coli 'Marionette' strains with 12 highly optimized small-molecule sensors" by Meyer et al., cited in the long description. pAJM.011 contains tetR and a YFP gene under inducible control by pTet.