Difference between revisions of "Part:BBa K4905007"

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==Information==
 
==Information==
This part is made up of the basic parts: Leucine zipper Z1 ([https://parts.igem.org/Part:BBa_K4905004 BBa_K4905004]), Leucine zipper Z2 ([https://parts.igem.org/Part:BBa_K4905005 BBa_K4905005]), Elastin-like polypeptide sequence A[60]I[60] ([https://parts.igem.org/Part:BBa_K4905001 BBa_K4905001]), and Elastin-like polypeptide sequence A[40]I[60] ([https://parts.igem.org/Part:BBa_K4905002 BBa_K4905002]). It was used by the TU Eindhoven 2023 team to form a hydrogel outside as well as inside e.coli BL21 cells.  
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This part is made up of the basic parts: Leucine zipper Z1 ([https://parts.igem.org/Part:BBa_K4905004 BBa_K4905004]), Leucine zipper Z2 ([https://parts.igem.org/Part:BBa_K4905005 BBa_K4905005]), Elastin-like polypeptide sequence A[60]I[60] ([https://parts.igem.org/Part:BBa_K4905001 BBa_K4905001]), and Elastin-like polypeptide sequence A[40]I[60] ([https://parts.igem.org/Part:BBa_K4905002 BBa_K4905002]). This resulted in the sequence Z1-I[60]-A[100]-I[60]-Z2. More details about the components of this sequence can be found on their corresponding part pages. It was used by the TU Eindhoven 2023 team to form a hydrogel outside as well as inside e.coli BL21 cells.  
  
The construct consists of Elastin-like Polypeptides (ELPs) and two different leucine zippers that have affinity for each other. In general, ELPs have hydrophilic and hydrophobic domains that exhibit reversible phase separation behavior that is temperature dependent. As shown in figure ..., this construct has a hydrophilic region in the middle and a hydrophobic region on each side of it. On both ends, the leucine zippers Z1 and Z2 are located for stronger interactions between the ELPs. This allows them to be used in the formation of a reversible hydrogel at a temperature of 37 °C.
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The construct consists of Elastin-like Polypeptides (ELPs) and two different leucine zippers that have affinity for each other. In general, ELPs have hydrophilic and hydrophobic domains that exhibit reversible phase separation behavior that is temperature dependent. As shown in figure ..., this construct has a hydrophilic region in the middle (A[100]) and a hydrophobic region on each side of it (I[60]). On both ends, the leucine zippers Z1 and Z2 are located for stronger interactions between the ELPs. This allows them to be used in the formation of a reversible hydrogel at a temperature of 37 °C.
  
 
[[File:ELP.png|figELP]]
 
[[File:ELP.png|figELP]]

Revision as of 11:02, 31 August 2023


Elastin-Like Polypeptide Triblock with Leucine Zippers

Information

This part is made up of the basic parts: Leucine zipper Z1 (BBa_K4905004), Leucine zipper Z2 (BBa_K4905005), Elastin-like polypeptide sequence A[60]I[60] (BBa_K4905001), and Elastin-like polypeptide sequence A[40]I[60] (BBa_K4905002). This resulted in the sequence Z1-I[60]-A[100]-I[60]-Z2. More details about the components of this sequence can be found on their corresponding part pages. It was used by the TU Eindhoven 2023 team to form a hydrogel outside as well as inside e.coli BL21 cells.

The construct consists of Elastin-like Polypeptides (ELPs) and two different leucine zippers that have affinity for each other. In general, ELPs have hydrophilic and hydrophobic domains that exhibit reversible phase separation behavior that is temperature dependent. As shown in figure ..., this construct has a hydrophilic region in the middle (A[100]) and a hydrophobic region on each side of it (I[60]). On both ends, the leucine zippers Z1 and Z2 are located for stronger interactions between the ELPs. This allows them to be used in the formation of a reversible hydrogel at a temperature of 37 °C.

figELP

Figure 1: Schematic representation of the composite part, an Elastin-Like Polypeptide with leucine zippers on the ends

Application

In the TU Eindhoven 2023 team project, the ELPs are, in the end, expressed inside e.coli BL21 cells. The hydrogel will be formed with electrostatic and hydrophobic interactions. At a temperature below 37 °C, the hydrophobic parts are surrounded by water molecules. This causes a low entropy state. When the temperature increases over 37 °C, these water molecules go into the bulk water phase what gains the solvent entropy. This makes it possible to form interactions with other ELP molecules [1].

When the hydrogel is formed inside e.coli BL21 cells, it prevents the cell from dividing. However, the cells remain functional. So they can still be used to express therapeutic agents, like Interleukin 10 in the project of the TU Eindhoven 2023 team.

Sequence and Features

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 1982
    Illegal XbaI site found at 99
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 1982
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 1982
    Illegal XhoI site found at 1999
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 1982
    Illegal XbaI site found at 99
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 1982
    Illegal XbaI site found at 99
    Illegal NgoMIV site found at 156
    Illegal NgoMIV site found at 336
    Illegal NgoMIV site found at 426
    Illegal NgoMIV site found at 606
    Illegal NgoMIV site found at 2928
    Illegal NgoMIV site found at 3105
    Illegal NgoMIV site found at 3195
  • 1000
    COMPATIBLE WITH RFC[1000]

Results

References

[1] Despanie, J., Dhandhukia, J. P., Hamm-Alvarez, S. F., & MacKay, J. A. (2016). Elastin-like polypeptides: Therapeutic applications for an emerging class of nanomedicines. Journal of Controlled Release, 240, 93–108. https://doi.org/10.1016/j.jconrel.2015.11.010