Difference between revisions of "Part:BBa K4307046"

 
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<partinfo>BBa_K4307046 short</partinfo>
 
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Nisin is a small peptide and it has been synthesized in bacteria before in literatures. In addition, some literatures have shown that the precursor of nisin, NisA, may have the function of inducing the two-component system after modified by NisB and NisC.  <br>
  
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This time, We refer to the previous method of synthesizing nisin in <i>E.coli</i>, and construct the fusion protein of nisA and affibody Z<sub>EGFR:2377</sub> to recognize EGFR. According to the protein sequence information provided in UniProt, we commissioned a biotechnology company to optimize the codon, artificially synthesized NisA-affi containing 6His in C terminal, nisB and nisC sequences and inserted them into the pET28a vector with kanamycin resistance and chloramphenicol resistance respectively.
 
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===Usage and Biology===
 
===Usage and Biology===
  
 
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<span class='h3bb'>Sequence and Features</span>
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<h2>Sequence and Features</h2>
 
<partinfo>BBa_K4307046 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K4307046 SequenceAndFeatures</partinfo>
  
  
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===Functional Parameters===
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<partinfo>BBa_K4307000 parameters</partinfo>
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<html>
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<h2>Characterization</h2>
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<p>The following figure demonstrates our successful construction.</p>
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<br>
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<div class="center">
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    <div class="thumb tnone">
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        <div class="thumbinner" style="width:50%;">
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            <a href="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-gel.png" class="image">
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                <img alt="" src="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-gel.png" width="100%" height=auto class="thumbimage" /></a>                  <div class="thumbcaption">
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                <div class="magnify">
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                    <a href="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-gel.png" class="internal" title="Enlarge"></a>
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                </div>
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                <b>Figure 1: </b> <b>The construction results of NisA-affi-NisB+NisC.</b>
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            </div>
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        </div>
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    </div>
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</div>
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<h3>Western blot was done to characterize the biobrick.  </h3>
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<p>To ensure the expression of NisA-affi, we managed to transform the two plasmids into BL21(DE3). After it, we induced the production of nisA-affibody and used Ni column to purify the bacteria lysate. Western blots assay targeting 6xHis tag was conducted and nisA-affibody expression was detected(Figure 2).  </p>
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<br>
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<div class="center">
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    <div class="thumb tnone">
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        <div class="thumbinner" style="width:50%;">
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            <a href="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k43070346-1.png" class="image">
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                <img alt="" src="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-1.png" width="100%" height=auto class="thumbimage" /></a>                  <div class="thumbcaption">
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                <div class="magnify">
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                    <a href="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-1.png" class="internal" title="Enlarge"></a>
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                </div>
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                <b>Figure 2: </b> <b> Western blot results to detect NisA-affibody expression.</b>
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            </div>
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        </div>
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    </div>
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</div>
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<h3>Flow cytometry was done to characterize the biobrick. </h3>
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<p>To measure the effectiveness of NisA-affi, we use it to induce expression of EGFP in pNisin2. If NisA-affi can function normally, the expression of downstream EGFP can be detected after addition of it.<br>
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We conducted flow cytometry for 4h induction bacteria(Figure 3) to detect the expression of EGFP under induced and control conditions. Flow cytometry result shows positive percentage of experimental group induced by 2μl NisA-affi is higher than control group, which means NisA-affi can act as the inducer of nisin TCS similar to nisin.</p>
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<br>
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<div class="center">
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    <div class="thumb tnone">
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        <div class="thumbinner" style="width:50%;">
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            <a href="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k43070346-2.png" class="image">
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                <img alt="" src="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-2.png" width="100%" height=auto class="thumbimage" /></a>                  <div class="thumbcaption">
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                <div class="magnify">
 +
                    <a href="https://static.igem.wiki/teams/4307/wiki/wiki-parts-files/mainpage/bba-k4307046-2.png" class="internal" title="Enlarge"></a>
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                </div>
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                <b>Figure 3: </b> <b> Flow cytometry results of pNisin2 induction using NisA-affibody.</b>
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            </div>
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        </div>
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    </div>
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</div>
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<h2>Conclusion</h2>
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<p>We successfully expressed the NisA-affi in E.coli, and the results of the flow cytometry showed that NisA-affi could perform the same function of inducing Nisin TCS as Nisin. In addition, the fusion protein can play a role of detecting other proteins by replacing affibody ZEGFR:2377 into their ligands.</p>
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</html>
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
 
===Functional Parameters===
 
===Functional Parameters===
 
<partinfo>BBa_K4307046 parameters</partinfo>
 
<partinfo>BBa_K4307046 parameters</partinfo>
 
<!-- -->
 
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Revision as of 15:56, 13 October 2022


NisABC

Nisin is a small peptide and it has been synthesized in bacteria before in literatures. In addition, some literatures have shown that the precursor of nisin, NisA, may have the function of inducing the two-component system after modified by NisB and NisC.

This time, We refer to the previous method of synthesizing nisin in E.coli, and construct the fusion protein of nisA and affibody ZEGFR:2377 to recognize EGFR. According to the protein sequence information provided in UniProt, we commissioned a biotechnology company to optimize the codon, artificially synthesized NisA-affi containing 6His in C terminal, nisB and nisC sequences and inserted them into the pET28a vector with kanamycin resistance and chloramphenicol resistance respectively.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1071
    Illegal PstI site found at 3237
    Illegal PstI site found at 3336
    Illegal PstI site found at 3923
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
    Illegal PstI site found at 1071
    Illegal PstI site found at 3237
    Illegal PstI site found at 3336
    Illegal PstI site found at 3923
    Illegal NotI site found at 1777
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1079
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1071
    Illegal PstI site found at 3237
    Illegal PstI site found at 3336
    Illegal PstI site found at 3923
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1071
    Illegal PstI site found at 3237
    Illegal PstI site found at 3336
    Illegal PstI site found at 3923
  • 1000
    COMPATIBLE WITH RFC[1000]


Characterization

The following figure demonstrates our successful construction.


Figure 1: The construction results of NisA-affi-NisB+NisC.

Western blot was done to characterize the biobrick.

To ensure the expression of NisA-affi, we managed to transform the two plasmids into BL21(DE3). After it, we induced the production of nisA-affibody and used Ni column to purify the bacteria lysate. Western blots assay targeting 6xHis tag was conducted and nisA-affibody expression was detected(Figure 2).


Figure 2: Western blot results to detect NisA-affibody expression.

Flow cytometry was done to characterize the biobrick.

To measure the effectiveness of NisA-affi, we use it to induce expression of EGFP in pNisin2. If NisA-affi can function normally, the expression of downstream EGFP can be detected after addition of it.
We conducted flow cytometry for 4h induction bacteria(Figure 3) to detect the expression of EGFP under induced and control conditions. Flow cytometry result shows positive percentage of experimental group induced by 2μl NisA-affi is higher than control group, which means NisA-affi can act as the inducer of nisin TCS similar to nisin.


Figure 3: Flow cytometry results of pNisin2 induction using NisA-affibody.

Conclusion

We successfully expressed the NisA-affi in E.coli, and the results of the flow cytometry showed that NisA-affi could perform the same function of inducing Nisin TCS as Nisin. In addition, the fusion protein can play a role of detecting other proteins by replacing affibody ZEGFR:2377 into their ligands.