Difference between revisions of "Part:BBa K4365007"

Revision as of 21:38, 11 October 2022

Signal peptide of RodA from Aspergillus nidulans

RodA is a protein found in Aspergillus nidulans and belongs to a family of highly secreted proteins called hydrophobins. The signal peptide from the protein led to higher turboRFP secretion efficiency in ''Saccharomyces cerevisiae'' than the α-mating factor pre-pro signal peptide K4365019.

Collection of fungal signal peptides
	ID	Source	Species	Prediction coefficient ^[1]	turboRFP secretion
sp1	BBa_K4365006	MPGI	Magnaporthe grisea	0.9562	Yes
sp2	BBa_K4365007	RodA	Aspergillus nidulans	0.9553	Yes
sp3	BBa_K4365008	HYPI	Aspergillus fumigatus	0.9703	No
sp4	BBa_K4365009	SsgA	Metarhizium anisopliae	0.9126	No
sp5	BBa_K4365010	HCF-4	Cladosporium fulvum	0.9126	Yes
sp6	BBa_K4365025	HCF-5	Cladosporium fulvum	0.9234	NA
sp7	BBa_K4365026	CCG-2	Neurospora crassa	0.9566	NA
sp8	BBa_K4365011	HCF-1	Cladosporium fulvum	0.6850	Yes
sp9	BBa_K4365027	HCF-2	Cladosporium fulvum	0.8144	NA
sp10	BBa_K4365012	HCF-3	Cladosporium fulvum	0.7934	No
sp11	BBa_K4365013	SC3	Schizophyllum commune	0.6327	No
sp12	BBa_K4365014	ABH3	Agaricus bisporus	0.9458	Yes
sp13	BBa_K4365028	COH1	Coprinus cinereus	0.8545	NA
sp14	BBa_K4365015	FBH1	Pleurotus ostreatus	0.3367	Yes
sp15	BBa_K4365016	Aa-PRI2	Agrocybe aegerita	0.6356	Yes
sp16	BBa_K4365033	Hyd-Pt1	Pisolithus tinctorius	0.8352	NA
sp17	BBa_K4365017	HFBI	Trichoderma reesei	0.9851	Yes
sp18	BBa_K4365018	HFBII	Trichoderma reesei	0.6862	Yes
sp19	BBa_K4365019	α-mating factor	Saccharomyces cerevisiae	0.9988	Yes

↑ José Juan Almagro Armenteros et al. (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks Nature Biotechnology, 37, 420-423, doi: 10.1038/s41587-019-0036-z

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

[signalp-1] José Juan Almagro Armenteros et al. (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks Nature Biotechnology, 37, 420-423, doi: 10.1038/s41587-019-0036-z

[1]

@@ Line 1: / Line 1: @@
 __NOTOC__
 <partinfo>BBa_K4365007 short</partinfo>
-RodA is a protein found in <i>Aspergillus nidulans</i> and belongs to a family of highly secreted proteins called hydrophobins. The signal peptide from the protein led to higher [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365020 turboRFP] secretion efficiency in ''Saccharomyces cerevisiae'' than the α-mating factor pre-pro signal peptide [https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365019 K4365019].
+RodA is a protein found in <i>Aspergillus nidulans</i> and belongs to a family of highly secreted proteins called hydrophobins. The signal peptide from the protein led to higher <html><a href="https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365020">turboRFP</a> secretion efficiency in ''Saccharomyces cerevisiae'' than the α-mating factor pre-pro signal peptide <a href="https://parts.igem.org/wiki/index.php?title=Part:BBa_K4365019"> K4365019</a></html>.