Difference between revisions of "Part:BBa K4129114"

Revision as of 09:23, 11 October 2022

The fungal synthetic transcription factor, FunsTF70 (LexA-LL-HbaR16-VP16-SV40)

FunsTF70 is a synthetic transcription factor (sTF). FunsTF05 should function as a transcription factor that can initiate transcription of the 6xLexO minimal promoter (BBa_K4129115). This sTF will be the sensing part of the biosensor.

FunsTF70 is a fusion protein consisting of the DNA-binding domain LexA, the ligand sensing domain HbaR16, the transactivation domain VP16 and the nuclear localization signal (NLS) SV40. The linker between LexA and HbaR16 was a longer version (Ottoz et. al (2014) compared to sBAD, which was the reference sTF (Castaño-Cerezo et. al (2020)).

LexA is a repressor that regulates the SOS response in E. coli (Radman. 1975). LexA binds to a specific DNA motif, LexO (Erill. et al (2003)), and it is the DNA binding domain that is used in FunsTF70. HbaR is a transcriptional factor from Rhodopseudomonas palustris that initiates transcription in the presence of benzoic acid (Egland. et al (2000)) or in the presence of benzoic acid derivatives (Castaño-Cerezo et. al (2020)). We created 16 mutants of HbaR and FunsTF70 carried mutant 16 of HbaR, which had the following mutations: L64I, F85H, A86G, A90Y and L97G.

Viral Protein 16 (VP16) from herpes simplex virus type 1 is a transcription factor that uses a transactivation domain to recruit the RNA polymerase II (Hirai et al. (2010)).The NLS SV40 is a small peptide sequence of PKKKRKV that enables transport of the protein to the nucleus (Garcia-Bustos et. al (1991)).

Characterization

The functionally of sTF70 were tested by measuring the fluorescence of an A. niger carring FunsTF70 and the mCherry reporter. The A. niger is grown on solid media plates. The plates contained either minimal media or minimal media with mM benzoic acid.

The fluorescence of the plates was assessed, after four days of incubation at 30℃, using the Vilber Fusion FX imager system. The intensity of the fluorescences was presented as grey-white. The exposure time was normalised to the fluorescences from genomic integrated BBa_K3046004, and this enabled comparison between plates. The exposure time used was 0.72 seconds. It is observed that genomic integrated BBa_K3046004 displays fluorescence and the negative control of BBa_K4129025 is barely visible. The expression of mCherry was activated by FunsTF70 both without 2 mM benzoic acid and in of presence benzoic acid. The expression of mCherry was not to the same expression level as a strong constitutive promoter like BBa_K3046004 (figure 1).

Figure 1: Pictures of fluorescent A. *niger*, which carries either genome integrated BBa_K3046004, BBa_K4129025 or FunsTF70. The picture are taken with 0.72 seconds exposure time. The A. *niger* is grown on plates containing minimal media (MM) or MM with 2 mM benzoic acid. The fluorescent is depicted as grey-white intensity.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 673
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 860
Illegal BamHI site found at 607
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal NgoMIV site found at 765
1000
COMPATIBLE WITH RFC[1000]

@@ Line 15: / Line 15: @@
 The fluorescence of the plates was assessed, after four days of incubation at 30<span>&#8451;</span>, using the Vilber Fusion FX imager system. The intensity of the fluorescences was presented as grey-white. The exposure time was normalised to the fluorescences from genomic integrated BBa_K3046004, and this enabled comparison between plates. The exposure time used was 0.72 seconds.
-It is observed that genomic integrated BBa_K3046004 displays fluorescence and the negative control of BBa_K4129025 is barely visible. The expression of mCherry was activated by FunsTF70, but not to the same expression level as a strong constitutive promoter like BBa_K3046004 (figure 1).
+It is observed that genomic integrated BBa_K3046004 displays fluorescence and the negative control of BBa_K4129025 is barely visible. The expression of mCherry was activated by FunsTF70 both without 2 mM benzoic acid and in of presence benzoic acid. The expression of mCherry was not to the same expression level as a strong constitutive promoter like BBa_K3046004 (figure 1).
 <html>