Difference between revisions of "Part:BBa K2205000"
Svetlana ia (Talk | contribs) (→Expression of mRFP1 under constitutive Anderson promoter) |
Svetlana ia (Talk | contribs) (→Part Documentation by TU_Dresden 2022 Team) |
||
| Line 18: | Line 18: | ||
==Expression of mRFP1 under constitutive Anderson promoter== | ==Expression of mRFP1 under constitutive Anderson promoter== | ||
| − | + | ===Measurement procedure=== | |
| − | <html>To measure the effect of the <a href="https://parts.igem.org/Part:BBa_J23100">Anderson J23100 promoter</a>on the RFP expression we used an analogous approach as described in the <a href="https://technology.igem.org/interlabs/2022">Interlab study.</a><br> </html> | + | <html>To measure the effect of the <a href="https://parts.igem.org/Part:BBa_J23100">Anderson J23100 promoter</a> on the RFP expression we used an analogous approach as described in the <a href="https://technology.igem.org/interlabs/2022">Interlab study.</a><br> </html> |
This included: | This included: | ||
#overnight culture in LB of colonies of interest | #overnight culture in LB of colonies of interest | ||
| Line 30: | Line 30: | ||
* measurements conducted every 2 hrs over a 24 hrs period after the start of the experiment | * measurements conducted every 2 hrs over a 24 hrs period after the start of the experiment | ||
| − | + | ===Comparison to <html><a href="https://parts.igem.org/Part:BBa_J04450">BBa_J04450</a></html>=== | |
| + | Firstly, we firstly measured <html><a href="https://parts.igem.org/Part:BBa_J04450">J4550 part</a></html> with and without IPTG induction, and then compared it to BBa_K2205000. We report that maximum level of fluorescence is not significant different in both parts (see <b>Fig. 1</b>). However, the appearance of mRFP1 fluorescence in bacteria with BBa_K2205000 was 3 hours slower than in original <html><a href="https://parts.igem.org/Part:BBa_J04450">J4550 part</a></html>. | ||
| + | |||
[[File:BBa_K2205000_fig1_comparison_with_LAC.png|thumb|center|600px| | [[File:BBa_K2205000_fig1_comparison_with_LAC.png|thumb|center|600px| | ||
'''Figure 1''': <html><b>A.</b> Lac promoter of <a href="https://parts.igem.org/Part:BBa_J04450">BBa_J04450</a> part and mRFP1 reporter downstream in presence of inductor (IPTG) and in its absence. <b>B.</b> Fluorescence/absorbance 600nm of mRFP1 of the <a href="https://parts.igem.org/Part:BBa_J04450">BBa_J04450</a> compared to BBa_K2205000 part with <a href="https://parts.igem.org/Part:BBa_J23100">J23100</a> promoter over 24 hour incubation of bacterial culture.</html>]] | '''Figure 1''': <html><b>A.</b> Lac promoter of <a href="https://parts.igem.org/Part:BBa_J04450">BBa_J04450</a> part and mRFP1 reporter downstream in presence of inductor (IPTG) and in its absence. <b>B.</b> Fluorescence/absorbance 600nm of mRFP1 of the <a href="https://parts.igem.org/Part:BBa_J04450">BBa_J04450</a> compared to BBa_K2205000 part with <a href="https://parts.igem.org/Part:BBa_J23100">J23100</a> promoter over 24 hour incubation of bacterial culture.</html>]] | ||
| − | ==Usage | + | ==Usage== |
| − | + | ||
Revision as of 15:49, 10 October 2022
J23100-RFP
BBa_K2205000 is a proposed composite BioBrick reporter that constitutively produces MFRP1. It possesses an MRFP1 coding sequence (E1010) after a strong Anderson promoter (J23100) and RBS (B0034). A double terminator (B0015) was added after the MRFP1 sequence. A BioBrick RFC10 prefix and suffix were added as well.
The construct was submitted to IDT for synthesis as a gBlock. Due to time constraints, work on assembling and further characterising this Biobrick was unable to finish.
This part could be used as an alternative to BBa_J04450 for white-red colony selection as suggested by TU_Dresden22 team.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30 - 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 616
Illegal AgeI site found at 728 - 1000COMPATIBLE WITH RFC[1000]
Part Documentation by TU_Dresden 2022 Team
Expression of mRFP1 under constitutive Anderson promoter
Measurement procedure
To measure the effect of the Anderson J23100 promoter on the RFP expression we used an analogous approach as described in the Interlab study.
This included:
- overnight culture in LB of colonies of interest
- dilution of overnight cultures down to 0.02 OD
- pipetting of the diluted samples into 96-well plates followed by fluorescence and absorbance measurements.
We took continuous fluorescence measurement of growing DH5-alpha E.coli in the temperature-controlled plate reader Tecan infinite200Pro with the following settings:
- 37°C with continuous shaking
- measurements conducted every 2 hrs over a 24 hrs period after the start of the experiment
Comparison to BBa_J04450
Firstly, we firstly measured J4550 part with and without IPTG induction, and then compared it to BBa_K2205000. We report that maximum level of fluorescence is not significant different in both parts (see Fig. 1). However, the appearance of mRFP1 fluorescence in bacteria with BBa_K2205000 was 3 hours slower than in original J4550 part.
Usage