Difference between revisions of "Part:BBa K4192120"

Revision as of 12:51, 9 October 2022

Plac-obcA-obcB-Fpoar, Oxalate secretion gene circuit

The expression products of obcA and obcB are enzymes needed to produce oxalate from citric acid and acetyl-CoA. And FpOAR protein can efflux oxalate. The composite part of these three genes can efflux oxalic acid out of the thallus. Because it only have one promoter at the beginning of the whole genetic circuit, the efflux rate of the generated oxalic acid is relatively low, which may also lead to the death of the bacteria more easily due to excessive accumulation of oxalic acid in the body. We have already tested it in E.coli and Pseudomonas fluorescens.

Contribution From CAU_China 2022

Characterization

CAU_China 2022 used this part as their oxalate secretion circuit. We transfered this circuit into pUC18 and pBBR1MCS2 to adapt to different chassis bacteria. This phenotype, in the way we test it, is reflected in the presence of more reducing substance outside the bacteria or changes in pH.

In E.coli DH5-alpha, we tested the gene by simple quantitive test of the generation and concentration variation of oxalic acid. This was accomplished by testing pH changes along with time in the liquid medium of the bacterial solution during 10 hours after induction. In this experiment, the three groups were separately inoculated into 10 mL liquid LB medium. The culture was induced after two hours of shaking at 37 ℃. After that, cultures were continued in the original conditions and the pH of the solution was measured every two hours.

Result of oxalic acid secretion in E. coli tested by measuring pH</p> <p>The origin pH is LB medium, since oxalic acid is weak acid, the efflux of oxalate will lead to the increase of pH outside bacteria. And the growth of bacteria itself will also increase the pH, so theoretically the bacteria transferred into the genetic circuit will have a higher pH increase compared with the negative control.

In this experiment, we can see that the experimental group has a prominent ability to increase pH. This can partly be explained by the correct phenotype, as the efflux oxalate may form alkaline sodium oxalate in the LB medium environment.

In P. fluorescens 2P24, we used the oxalic acid content detection kit (BoxBio, Beijing), which measure oxalic acid by salicylic acid complexed iron colorimetric method, allowing us to conduct colorimetric test for oxalic acid and other reducing substances in parallel treated samples with the same OD.

We added the same amount of induced bacterial solution to each of the medium, and they were first adjusted to the same OD₅₉₅ with ddH₂O. The control group is P. fluorescens 2P24 with an empty pBBR1MCS2 vector. After shaking culture at 28 ℃ for 12 hours, they were induced by IPTG. After another 8 hours, the bacterial solution was collected before we used a vacuum concentrator concentrate the products to ten times theirs original concentration.

Fig.2 Standard curves of oxalate concentration and absorbance at 520 nm.

Fig.3 Oxalic acid concentration test using 96-well plate. Lighter the red, higher the oxalic acid concentration in the well. Control: empty vector, 2nd: BBa_K4192120, 3rd:BBa_K4192121. In: Bacteria lysate, detected the oxalic acid concentration inside of the bacteria, out: the supernate of bacteria solution ,detected the oxalic acid concentration outside of the bacteria. Sequence and Features