Difference between revisions of "Part:BBa K4193027:Design"

 
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===References===
 
===References===
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Yang, X., Liu, J., Zhang, J., Shen, Y., Qi, Q., Bao, X. and Hou, J. (2021). Quorum sensing-mediated protein degradation for dynamic metabolic pathway control in Saccharomyces cerevisiae. Metabolic Engineering, 64, pp.85–94. doi:10.1016/j.ymben.2021.01.010.

Revision as of 11:00, 8 October 2022


quorum sensing system (two parts)


Assembly Compatibility:
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  • 12
    INCOMPATIBLE WITH RFC[12]
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    INCOMPATIBLE WITH RFC[21]
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    Illegal BglII site found at 3435
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    INCOMPATIBLE WITH RFC[23]
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    Illegal EcoRI site found at 2520
    Illegal EcoRI site found at 4394
    Illegal EcoRI site found at 4719
    Illegal XbaI site found at 1618
    Illegal XbaI site found at 2077
    Illegal XbaI site found at 2161
    Illegal XbaI site found at 2524
    Illegal XbaI site found at 5680
    Illegal SpeI site found at 4231
    Illegal PstI site found at 4481
    Illegal PstI site found at 5180
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 129
    Illegal EcoRI site found at 2520
    Illegal EcoRI site found at 4394
    Illegal EcoRI site found at 4719
    Illegal XbaI site found at 1618
    Illegal XbaI site found at 2077
    Illegal XbaI site found at 2161
    Illegal XbaI site found at 2524
    Illegal XbaI site found at 5680
    Illegal SpeI site found at 4231
    Illegal PstI site found at 4481
    Illegal PstI site found at 5180
    Illegal NgoMIV site found at 5447
    Illegal NgoMIV site found at 5487
    Illegal NgoMIV site found at 5527
    Illegal NgoMIV site found at 5567
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    Illegal AgeI site found at 5537
    Illegal AgeI site found at 5577
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

we use cytokinin-mediated quorum sensing circuits from Arabidopsis thaliana makes our engineered microorganisms only reaches a certain population density will start fermentation process, used for decoupling competition between cell growth and fermentation. Cytokinin isopentenyladenine (IP), as quorum sensing molecule, is the product of ATP catalyzed by AtlPT4. This Quorum-sensing systems were used to test the effect of IP concentration on the expression of target genes, and thus AtlPT4 was not available. When the signal molecule IP reaches a certain concentration, it activates the SSRE promoter and initiates transcription.


Source

synthesize from company

References

Yang, X., Liu, J., Zhang, J., Shen, Y., Qi, Q., Bao, X. and Hou, J. (2021). Quorum sensing-mediated protein degradation for dynamic metabolic pathway control in Saccharomyces cerevisiae. Metabolic Engineering, 64, pp.85–94. doi:10.1016/j.ymben.2021.01.010.