Difference between revisions of "Part:BBa K2332004"
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==Characterization from XMU-China 2021== | ==Characterization from XMU-China 2021== | ||
| + | '''Group''': [https://2020.igem.org/Team/XMU-China iGEM Team XMU-China 2020] | ||
| + | ===Characterization=== | ||
In some designs of pBLind-EL222 system, EL222 was usually expressed by a constitutive promoter in the Anderson family, such as <partinfo>BBa_J23119</partinfo> and <partinfo>BBa_J23106</partinfo>. Although the EL222 protein is activated to bind pBLind promoter due to the conformational change upon blue light illumination, the binding events still happen by chance in dark environment, which results in unexpected transcriptional leakage of the genes controlled by pBLind promoter. Reducing the existent pool of EL222 protein in the cell will low down the leakage level in the dark state. Therefore, using an inducible promoter to control the expression of EL222 seems to be an ideal option to lower the leakage when the blue-light irradiation is not supplied. | In some designs of pBLind-EL222 system, EL222 was usually expressed by a constitutive promoter in the Anderson family, such as <partinfo>BBa_J23119</partinfo> and <partinfo>BBa_J23106</partinfo>. Although the EL222 protein is activated to bind pBLind promoter due to the conformational change upon blue light illumination, the binding events still happen by chance in dark environment, which results in unexpected transcriptional leakage of the genes controlled by pBLind promoter. Reducing the existent pool of EL222 protein in the cell will low down the leakage level in the dark state. Therefore, using an inducible promoter to control the expression of EL222 seems to be an ideal option to lower the leakage when the blue-light irradiation is not supplied. | ||
[[File:T--XMU-China--EL222_contribution.jpg|800px|center]] | [[File:T--XMU-China--EL222_contribution.jpg|800px|center]] | ||
| − | + | '''Fig. 1.''' The illustration and characterization of the system. (A)Gene circuit illustration for the system.(B) RFUsfGFP/OD<sub>600</sub> of the system in dark and blue-light condition was calculated as time progressed. | |
| − | The result showed that the system maintained a well blue-light sensitivity and a higher expression level of sfGFP in the system was observed as time progressed (Fig. | + | The result showed that the system maintained a well blue-light sensitivity and a higher expression level of sfGFP in the system was observed as time progressed (Fig. 1B). It demonstrated that the EL222 was able to work as a photosensitive DNA-binding protein and pBLind could be activated by EL222. |
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Revision as of 01:42, 22 October 2021
EL222, photosensitive DNA-binding protein
Usage and Biology
EL222 is a natural photosensitive DNA-binding protein from the marine bacterium Erythrobacter litoralis HTCC2594. In the dark, EL222 is in its inactive form where its N-terminal LOV domain represses its DNA-binding C-terminal HTH domain. Upon blue light exposure (450nm), LOV-HTH interaction is released, allowing it to dimerize and bind its DNA binding regions.
Characterization from XMU-China 2021
Group: iGEM Team XMU-China 2020
Characterization
In some designs of pBLind-EL222 system, EL222 was usually expressed by a constitutive promoter in the Anderson family, such as BBa_J23119 and BBa_J23106. Although the EL222 protein is activated to bind pBLind promoter due to the conformational change upon blue light illumination, the binding events still happen by chance in dark environment, which results in unexpected transcriptional leakage of the genes controlled by pBLind promoter. Reducing the existent pool of EL222 protein in the cell will low down the leakage level in the dark state. Therefore, using an inducible promoter to control the expression of EL222 seems to be an ideal option to lower the leakage when the blue-light irradiation is not supplied.
Fig. 1. The illustration and characterization of the system. (A)Gene circuit illustration for the system.(B) RFUsfGFP/OD600 of the system in dark and blue-light condition was calculated as time progressed.
The result showed that the system maintained a well blue-light sensitivity and a higher expression level of sfGFP in the system was observed as time progressed (Fig. 1B). It demonstrated that the EL222 was able to work as a photosensitive DNA-binding protein and pBLind could be activated by EL222.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 81
Illegal AgeI site found at 306 - 1000COMPATIBLE WITH RFC[1000]