Difference between revisions of "Part:BBa K3905016"
| Line 10: | Line 10: | ||
<centre> | <centre> | ||
<figure> | <figure> | ||
| − | <img width="500px" src="https://2021.igem.org/wiki/images/ | + | <img width="500px" src="https://2021.igem.org/wiki/images/7/73/T--City_of_London_UK--Hardware_miRPA1.png"> |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
</figure> | </figure> | ||
</centre> | </centre> | ||
</html> | </html> | ||
| + | |||
As seen in the diagram above, two DNA probes, one with 5’ phosphorylation, bind to the miRNA, and are ligated together by DNA ligase. Then, primers are added, with DNA polymerase, and complementary strands to the ligated probes are synthesised. Then, RPA can take place: primers, associated with recombinase protein so they can dislodge the strands, replicating them in a similar method to PCR, but as no heat cycles are required to break up the strands, the process can take place isothermally. | As seen in the diagram above, two DNA probes, one with 5’ phosphorylation, bind to the miRNA, and are ligated together by DNA ligase. Then, primers are added, with DNA polymerase, and complementary strands to the ligated probes are synthesised. Then, RPA can take place: primers, associated with recombinase protein so they can dislodge the strands, replicating them in a similar method to PCR, but as no heat cycles are required to break up the strands, the process can take place isothermally. | ||
| Line 28: | Line 22: | ||
<centre> | <centre> | ||
<figure> | <figure> | ||
| − | <img width="600px" src="https://2021.igem.org/wiki/images/ | + | <img width="600px" src="https://2021.igem.org/wiki/images/9/95/T--City_of_London_UK--GRPA2.png"> |
</figure> | </figure> | ||
</centre> | </centre> | ||
| Line 39: | Line 33: | ||
<centre> | <centre> | ||
<figure> | <figure> | ||
| − | <img width="600px" src="https://2021.igem.org/wiki/images/ | + | <img width="600px" src="https://2021.igem.org/wiki/images/thumb/9/90/T--City_of_London_UK--Hardware_miRPA3.png/974px-T--City_of_London_UK--Hardware_miRPA3.png"> |
</figure> | </figure> | ||
</centre> | </centre> | ||
| Line 48: | Line 42: | ||
<centre> | <centre> | ||
<figure> | <figure> | ||
| − | <img width="600px" src="https://2021.igem.org/wiki/images/ | + | <img width="600px" src="https://2021.igem.org/wiki/images/0/04/T--City_of_London_UK--grpa4.png"> |
</figure> | </figure> | ||
</centre> | </centre> | ||
Latest revision as of 22:55, 21 October 2021
210-3p Probe 2
This is one of the two probes required for the isothermal amplification of miR-210-3p.
How our miRPA works
As seen in the diagram above, two DNA probes, one with 5’ phosphorylation, bind to the miRNA, and are ligated together by DNA ligase. Then, primers are added, with DNA polymerase, and complementary strands to the ligated probes are synthesised. Then, RPA can take place: primers, associated with recombinase protein so they can dislodge the strands, replicating them in a similar method to PCR, but as no heat cycles are required to break up the strands, the process can take place isothermally.
In order for the miRNA to be detected, we decided to use ‘asymmetric RPA’: an excess of forward primers are added (usually 5x the amount), so an excess of the strand that was originally miRNA form, so there is now ssDNA with the miRNA code in DNA. This can be detected by our toehold switches.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]