Difference between revisions of "Part:BBa K3734025"
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<p>GIP-miR21T-GI-GAL4-4XmiR21T consists of glucose-induced promoter GIP, photosensitive protein GI, double yeast hybrid system components GAL4 and miR21T. It is regulated by both glucose concentration and blue <br>light, which improves the safety of the whole system. At the same time, it is also suppressed by miR21 feedback, which makes the whole system form a closed loop <br>and makes the reaction more sensitive. | <p>GIP-miR21T-GI-GAL4-4XmiR21T consists of glucose-induced promoter GIP, photosensitive protein GI, double yeast hybrid system components GAL4 and miR21T. It is regulated by both glucose concentration and blue <br>light, which improves the safety of the whole system. At the same time, it is also suppressed by miR21 feedback, which makes the whole system form a closed loop <br>and makes the reaction more sensitive. | ||
</p> | </p> | ||
− | <p>In order to increase the safety of patients' use, it may be difficult to achieve the expected goal of accurate regulation by relying on the regulation of blood glucose <br>concentration alone, so we designed a pair of photosensitive proteins <br>of GI (BBa_K3734004) and LOV (BBa_K3734006). Under blue light irradiation, the Protein structure changes and interacts with each other to form a GAL4-GI-LOV-VP16 quadruple, while GAL4 (BBa_K3734005) identifies and combines 9XUAS (BBa_K3734016), so that VP16 can activate the gene of downstream expression. | + | <p>In order to increase the safety of patients' use, it may be difficult to achieve the expected goal of accurate regulation by relying on the regulation of blood glucose <br>concentration alone, so we designed a pair of photosensitive proteins <br>of GI ( |
+ | <a | ||
+ | href="https://parts.igem.org/wiki/index.php?title=Part:BBa_K3734004" target="_blank">BBa_K3734033</a>) and LOV (<a href="https://parts.igem.org/wiki/index.php?title=Part:BBa_K3734006" target="_blank">BBa_K3734033</a>). Under blue light irradiation, the Protein structure changes and interacts with each other to form a GAL4-GI-LOV-VP16 quadruple, while GAL4 ( | ||
+ | <a | ||
+ | href="https://parts.igem.org/wiki/index.php?title=Part:BBa_K3734005" target="_blank">BBa_K3734033</a>) identifies and combines 9XUAS (<a href="https://parts.igem.org/wiki/index.php?title=Part:BBa_K3734016" target="_blank">BBa_K3734033</a>), so that VP16 can activate the gene of downstream expression. | ||
</p> | </p> | ||
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Revision as of 18:12, 20 October 2021
GIP-miR21T-GI-GAL4-4XmiR21T
GIP is a promoter that can be induced by glucose.And miR21T is miR21's target.When miR21 combined with miR21T, it will inhibit the expression of target gene.GI is a kind of light-activated protein. If you shine blue light on it, it will change its own structure and will be able to combined with LOV. GAL4 is a kind of protein that can find and combined with UAS DNA structure domain.
GIP-miR21T-GI-GAL4-4XmiR21T
GIP-miR21T-GI-GAL4-4XmiR21T consists of glucose-induced promoter GIP, photosensitive protein GI, double yeast hybrid system components GAL4 and miR21T. It is regulated by both glucose concentration and blue
light, which improves the safety of the whole system. At the same time, it is also suppressed by miR21 feedback, which makes the whole system form a closed loop
and makes the reaction more sensitive.
In order to increase the safety of patients' use, it may be difficult to achieve the expected goal of accurate regulation by relying on the regulation of blood glucose
concentration alone, so we designed a pair of photosensitive proteins
of GI (
BBa_K3734033) and LOV (BBa_K3734033). Under blue light irradiation, the Protein structure changes and interacts with each other to form a GAL4-GI-LOV-VP16 quadruple, while GAL4 (
BBa_K3734033) identifies and combines 9XUAS (BBa_K3734033), so that VP16 can activate the gene of downstream expression.
1.Pattern diagram
Fig.1 The model diagram of GIP-miR21T-GI-GAL4-4XmiR21T
2.Experiment
2.1 Method
We used report gene LUC to represent the effect of GIP-miR21T-GI-GAL4-4XmiR21T
2.2 Result
Fig.2 Light controlled system testing experiment
Fig.3 Expression level analysis under blue light irradiation and dark treatment
3.Caution
The duration of GI and LOV after 450nm blue light exposure will vary with the irradiation method, intensity, etc. In the experiment, we adopted the method of irradiating strong light for 30 minutes first, and then low light for 30 minutes. The GAL4 binding domain is universal in eukaryotic cells, but transcription activators (such as VP16) that cooperate with GAL4 need to be properly selected according to different chassis organisms.
Reference:
[1]Chun Jeih Ryu , Charles E Whitehurst, Jianzhu Chen.Expression of Gal4-VP16 and Gal4-DNA binding domain under the control of the T lymphocyte-specific lck proximal promoter in transgenic mice[J].BMB Rep. 2008 Aug 31;41(8):575-80.
[2]Masayuki Yazawa , Amir M Sadaghiani, Brian Hsueh.Induction of protein-protein interactions in live cells using light[J].Nat Biotechnol. 2009 Oct;27(10):941-5.
[3]Kai Zhang , Xue-Jiao Yang , Ting-Ting Zhang.In situ imaging and interfering Dicer-mediated cleavage process via a versatile molecular beacon probe.Anal ChimActa.2019Nov4;1079:146-152.
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 4405
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 4300
Illegal XhoI site found at 1953
Illegal XhoI site found at 5001 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 899
Illegal NgoMIV site found at 2455
Illegal AgeI site found at 3682 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 4920
Illegal BsaI.rc site found at 216
Illegal BsaI.rc site found at 3079