Difference between revisions of "Part:BBa K4083008"
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<partinfo>BBa_K4083008 short</partinfo> | <partinfo>BBa_K4083008 short</partinfo> | ||
− | This plasmid consists of four parts: pRGPDuo2 plasmid; nadE, rhlA, and rhlB coding sequences (https://parts.igem.org/Part:BBa_K4083000, https://parts.igem.org/Part:BBa_K4083004, https://parts.igem.org/Part:BBa_K4083006, https://parts.igem.org/Part:BBa_K4083007). | + | This plasmid consists of four parts: pRGPDuo2 plasmid; nadE, rhlA, and rhlB coding sequences (https://parts.igem.org/Part:BBa_K4083000, https://parts.igem.org/Part:BBa_K4083004, https://parts.igem.org/Part:BBa_K4083006, https://parts.igem.org/Part:BBa_K4083007). However, for Biobricks purposes, we segmented pRGPDuo plasmid into smaller fragments: TetR/TetA: Part:BBa K2800025 - parts.igem.org; tetR: Part:BBa K4083012 - parts.igem.org; pRO1600: Part:BBa K4083013 - parts.igem.org; LacI reverse: Part:BBa K4083010 - parts.igem.org; Laciq reverse Part:BBa K4083011 - parts.igem.org; Ptac: https://parts.igem.org/Part:BBa_K864400; KanR: https://parts.igem.org/Part:BBa_J31003; ColE1: https://parts.igem.org/Part:BBa_K2560036 |
https://static.igem.org/mediawiki/parts/thumb/e/e2/BBa_K4083008-pRGPDuo2_composite.png/696px-BBa_K4083008-pRGPDuo2_composite.png | https://static.igem.org/mediawiki/parts/thumb/e/e2/BBa_K4083008-pRGPDuo2_composite.png/696px-BBa_K4083008-pRGPDuo2_composite.png |
Revision as of 07:58, 20 October 2021
RPGDuo2 plasmid with nadE and rhlBA genes
This plasmid consists of four parts: pRGPDuo2 plasmid; nadE, rhlA, and rhlB coding sequences (https://parts.igem.org/Part:BBa_K4083000, https://parts.igem.org/Part:BBa_K4083004, https://parts.igem.org/Part:BBa_K4083006, https://parts.igem.org/Part:BBa_K4083007). However, for Biobricks purposes, we segmented pRGPDuo plasmid into smaller fragments: TetR/TetA: Part:BBa K2800025 - parts.igem.org; tetR: Part:BBa K4083012 - parts.igem.org; pRO1600: Part:BBa K4083013 - parts.igem.org; LacI reverse: Part:BBa K4083010 - parts.igem.org; Laciq reverse Part:BBa K4083011 - parts.igem.org; Ptac: https://parts.igem.org/Part:BBa_K864400; KanR: https://parts.igem.org/Part:BBa_J31003; ColE1: https://parts.igem.org/Part:BBa_K2560036
By inserting this plasmid, we predicted the effective rhamnolipid production by Pseudomonas putida. Since Pseudomonas putida has all genes required for rhamnolipid production except for rhlAB, the rhlA and rhlb coding sequences inserted in plasmid can allow engineered P. putida to synthesize mono-rhamnolipid by itself. [1]
Reference:
[1] Tiso, T., Sabelhaus, P., Behrens, B., Wittgens, A., Rosenau, F., Hayen, H., & Blank, L. M. (2016b). Creating metabolic demand as an engineering strategy in Pseudomonas putida – Rhamnolipid synthesis as an example. Metabolic Engineering Communications, 3, 234–244. https://doi.org/10.1016/j.meteno.2016.08.002
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 5565
Illegal BamHI site found at 6125
Illegal XhoI site found at 1757
Illegal XhoI site found at 2024
Illegal XhoI site found at 6301 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 1949
Illegal NgoMIV site found at 2019
Illegal NgoMIV site found at 2240
Illegal NgoMIV site found at 4400 - 1000COMPATIBLE WITH RFC[1000]