Difference between revisions of "Part:BBa K3798002"
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Aptamers are oligonucleotides that can bind targeted molecules with its secondary structures, in our project, Ag+ ion. BBa_K3798002 is a Ag+ aptamer obtained from a previous paper[1].  
 
Aptamers are oligonucleotides that can bind targeted molecules with its secondary structures, in our project, Ag+ ion. BBa_K3798002 is a Ag+ aptamer obtained from a previous paper[1].  
  
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===Characterization===
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===Usage and Biology===
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==Binding efficiency and stability==
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[[File:T--SHSBNU_China--silver ion 1.png|600px|thumb|center]]
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<p  class="figure-description"><b><center>Fig.1 Remaining Ag+ ion concentration of the solution after treated by different types of aptamers. </center></b></p >
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Aptamer 1 shows a binding efficacy of about 75%, although it seems like a high binding efficiency, it do not satisfies the safe limit of concentration of the silver ions. Therefore, this aptamer is discarded and was subjected for further examination.
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===Reference===
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1. Hall Sedlak, R., Hnilova, M., Grosh, C., Fong, H., Baneyx, F., & Schwartz, D. et al. (2012). Engineered Escherichia coli Silver-Binding Periplasmic Protein That Promotes Silver Tolerance. Applied And Environmental Microbiology, 78(7), 2289-2296. doi: 10.1128/aem.06823-11
  
 
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Revision as of 13:54, 18 October 2021


ssDNA, an aptamer for Ag+ ion

Silver is one of the most wasted precious metals that can be found in effluents, streams and even food. As our project is to develop a precious metal recycling platform, we chose Ag+ as the demonstration ion of this phase of the project. Aptamers are oligonucleotides that can bind targeted molecules with its secondary structures, in our project, Ag+ ion. BBa_K3798002 is a Ag+ aptamer obtained from a previous paper[1].

Characterization

Binding efficiency and stability

T--SHSBNU China--silver ion 1.png

Fig.1 Remaining Ag+ ion concentration of the solution after treated by different types of aptamers.

Aptamer 1 shows a binding efficacy of about 75%, although it seems like a high binding efficiency, it do not satisfies the safe limit of concentration of the silver ions. Therefore, this aptamer is discarded and was subjected for further examination.


Reference

1. Hall Sedlak, R., Hnilova, M., Grosh, C., Fong, H., Baneyx, F., & Schwartz, D. et al. (2012). Engineered Escherichia coli Silver-Binding Periplasmic Protein That Promotes Silver Tolerance. Applied And Environmental Microbiology, 78(7), 2289-2296. doi: 10.1128/aem.06823-11

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]