Difference between revisions of "Part:BBa K3771010"
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<br><br><b style="font-size:1.3rem">Biology | <br><br><b style="font-size:1.3rem">Biology | ||
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− | <br><br>In E. coli, the β-barrel conformation of OmpA is composed of extracellular loops that help play a role in the detection of outer membrane stress and binding of extracellular molecules. OmpA also serves as a porin channel that regulates water transport within the bacterial cell. [2] | + | <br><br>In <i.E. coli</i>, the β-barrel conformation of OmpA is composed of extracellular loops that help play a role in the detection of outer membrane stress and binding of extracellular molecules. OmpA also serves as a porin channel that regulates water transport within the bacterial cell. [2] |
<br><br><b style="font-size:1.3rem">Usage | <br><br><b style="font-size:1.3rem">Usage | ||
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<br>In our project, the sequence of OmpA protein was used to construct the OmpA/OprF chimeric protein. | <br>In our project, the sequence of OmpA protein was used to construct the OmpA/OprF chimeric protein. | ||
− | <br>To construct our OmpA/OprF chimeric protein, we replaced Loop 1 (AA 38-54) of OmpA from E. coli with Loop 5 (AA 198-237) of OprF from P. aeruginosa, [4] which resulted in the final OmpA/OprF chimeric protein. The new extracellular peptides of the OmpA/OprF chimeric protein allow for binding of IFN-γ to the E. coli outer membrane. | + | <br>To construct our OmpA/OprF chimeric protein, we replaced Loop 1 (AA 38-54) of OmpA from <i>E. coli</i> with Loop 5 (AA 198-237) of OprF from <i>P. aeruginosa</i>, [4] which resulted in the final OmpA/OprF chimeric protein. The new extracellular peptides of the OmpA/OprF chimeric protein allow for binding of IFN-γ to the <i>E. coli</i> outer membrane. |
− | <br>In the IFN-γ sensing system, OmpA/OprF chimeric protein expression is driven by the ompA promoter. Binding of IFN-γ to the OmpA/OprF chimeric protein activates the pspA promoter, producing the enzyme required for the synthesis of taurine. | + | <br>In the IFN-γ sensing system, OmpA/OprF chimeric protein expression is driven by the <i>ompA</i> promoter. Binding of IFN-γ to the OmpA/OprF chimeric protein activates the <i>pspA</i> promoter, producing the enzyme required for the synthesis of taurine. |
<br><br><b style="font-size:1.3rem">Characterization | <br><br><b style="font-size:1.3rem">Characterization | ||
</b> | </b> |
Revision as of 12:56, 18 October 2021
Outer Membrane Protein A (OmpA)
Description
Outer membrane protein A (OmpA) is a 35 kDa transmembrane protein found in many enterobacteria. It is responsible for maintaining the stability of the bacterial membrane and cell signaling. [1]
Biology
In <i.E. coli</i>, the β-barrel conformation of OmpA is composed of extracellular loops that help play a role in the detection of outer membrane stress and binding of extracellular molecules. OmpA also serves as a porin channel that regulates water transport within the bacterial cell. [2]
Usage
In our project, the sequence of OmpA protein was used to construct the OmpA/OprF chimeric protein.
To construct our OmpA/OprF chimeric protein, we replaced Loop 1 (AA 38-54) of OmpA from E. coli with Loop 5 (AA 198-237) of OprF from P. aeruginosa, [4] which resulted in the final OmpA/OprF chimeric protein. The new extracellular peptides of the OmpA/OprF chimeric protein allow for binding of IFN-γ to the E. coli outer membrane.
In the IFN-γ sensing system, OmpA/OprF chimeric protein expression is driven by the ompA promoter. Binding of IFN-γ to the OmpA/OprF chimeric protein activates the pspA promoter, producing the enzyme required for the synthesis of taurine.
Characterization
The ompA/oprF sequence was synthesized by IDT and amplified by PCR. Agarose gel electrophoresis result is shown in Fig. 2.
Expression of OmpA/OprF chimeric protein was confirmed by western blot using anti-OmpA antibody.
References
[1]Wang Y. The Function of OmpA in Escherichia coli. Biochemical and Biophysical Research Communications. 2002;292(2):396-401. doi:10.1006/bbrc.2002.6657
[2]Ortiz-Suarez Maite L, Samsudin F, Piggot Thomas J, Bond Peter J, Khalid S. Full-Length OmpA: Structure, Function, and Membrane Interactions Predicted by Molecular Dynamics Simulations. Biophysical Journal. 2016;111(8):1692-1702. doi:10.1016/j.bpj.2016.09.009
[4]Aurand TC, March JC. Development of a synthetic receptor protein for sensing inflammatory mediators interferon‐γ and tumor necrosis factor‐α. Biotechnology and Bioengineering. 2016;113(3):492-500. doi:10.1002/bit.25832
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 881
Illegal BamHI site found at 744 - 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]