Difference between revisions of "Part:BBa K3888011:Design"

 
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<partinfo>BBa_K3888011 short</partinfo>
 
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[[File:T--SJTang--BBa_K3888011-1.png]]<br>
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<partinfo>BBa_K3888011 SequenceAndFeatures</partinfo>
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Figure 1: The Oxygen-tolerant Hydrogenase introduction plasmid constructed, which has a length of 8261bp.<br>
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Two genes, HoxG1 and HoxK1, which are the main components of the whole introduction plasmid. HoxG1 encodes the large subunit of the oxygen-tolerant hydrogenase and HoxK1 encodes the small subunit of the oxygen-tolerant hydrogenase. The position of two genes are located from 5094bp to 6926bp and from 7137bp to 8102bp respectively.
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The two genes are promoted by pTac, a promoter. pTac is controlled by a lac operator with a LacI upstream. IPTG will induce lacI repressors to change its conformation and prevent it from combining with lac operator thus starts the transcription of genes, which are HoxG1 and HoxK1.
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There is an RBS located between 5068bp and 5087bp. We chose RBS:B0032m as our ribosome binding sequence. It's a wild-type (also referred to as the natural type).<partinfo>BBa_K3888011 SequenceAndFeatures</partinfo>
  
  

Revision as of 11:46, 17 October 2021


[Ni-Fe] Hydrogenase Core gene HoxG1 and HoxK1 T--SJTang--BBa K3888011-1.png
Figure 1: The Oxygen-tolerant Hydrogenase introduction plasmid constructed, which has a length of 8261bp.
Two genes, HoxG1 and HoxK1, which are the main components of the whole introduction plasmid. HoxG1 encodes the large subunit of the oxygen-tolerant hydrogenase and HoxK1 encodes the small subunit of the oxygen-tolerant hydrogenase. The position of two genes are located from 5094bp to 6926bp and from 7137bp to 8102bp respectively. The two genes are promoted by pTac, a promoter. pTac is controlled by a lac operator with a LacI upstream. IPTG will induce lacI repressors to change its conformation and prevent it from combining with lac operator thus starts the transcription of genes, which are HoxG1 and HoxK1. There is an RBS located between 5068bp and 5087bp. We chose RBS:B0032m as our ribosome binding sequence. It's a wild-type (also referred to as the natural type).

Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal XbaI site found at 363
    Illegal XbaI site found at 465
    Illegal SpeI site found at 531
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal SpeI site found at 531
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 678
    Illegal BamHI site found at 1593
    Illegal BamHI site found at 2932
    Illegal XhoI site found at 1915
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal XbaI site found at 363
    Illegal XbaI site found at 465
    Illegal SpeI site found at 531
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal XbaI site found at 363
    Illegal XbaI site found at 465
    Illegal SpeI site found at 531
    Illegal AgeI site found at 1809
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

Change signal sequence of HoxK1


Source

Hydrogenovibrio marinus MH-110

References