Difference between revisions of "Part:BBa K3718010"
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__NOTOC__
 
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<partinfo>BBa_K3718010 short</partinfo>
 
<partinfo>BBa_K3718010 short</partinfo>
  
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GFP is produced and growth rate is restored in the presence of caffeine molecule. This acts as a proof of concept in our project. This part contains the plasmid insert of component II (cloning) of our toolkit.
  
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https://2021.igem.org/wiki/images/thumb/4/42/T--Hong_Kong_UCCKE--using_toolkit.jpeg/800px-T--Hong_Kong_UCCKE--using_toolkit.jpeg
  
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An example product of our toolkit part II after cloning
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After the experiments of the Modular Receptor Platform (MRP) expression , and the transformation of the arcA and iclR genes into <I>E. coli</I>, which has its <i>arcA</i> and <i>iclR</i> knocked out before the transformation, have proven to be successful. We will use caffeine-sensitive MRP as a testing part to model the system. Caffeine will be used to homodimerize the receptors, and is expected to induce the expression of downstream genes. This model will be used to conduct three experiments to confirm the functionality of the tool. By cloning in an antibody VHH gene against caffeine and green fluorescent protein (GFP) as the desired gene to be expressed, we expect the platform is activated in the presence of caffeine to express GFP, <i>arcA</i> and <i>iclR</i>, which will result in an increase in growth rate and a visible green color under UV.
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After the experiments of the Modular Receptor Platform (MRP) expression , and the transformation of the arcA and iclR genes into <I>E. coli</I>, which has its arcA and iclR knocked out before the transformation, have proven to be successful. We will use caffeine-sensitive MRP as a testing part to model the system. Caffeine will be used to homodimerize the receptors, and is expected to induce the expression of downstream genes. This model will be used to conduct three experiments to confirm the functionality of the tool. By cloning in an antibody VHH gene against caffeine and green fluorescent protein (GFP) as a desired gene to be expressed, we expect the platform is activated in the presence of caffeine to express GFP, arcA and iclR, which will result in an increase in growth rate and a visible green color under UV.
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<h3>Reference</h3>
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<p> H. Waegeman, J. Beauprez, H. Moens, J. Maertens, M. De Mey, M. R. Foulquié-Moreno, J. J. Heijnen, D. Charlier, and W. Soetaert, “Effect of ICLR and ARCA knockouts on biomass formation and metabolic fluxes in escherichia coli K12 and its implications on understanding the metabolism of escherichia coli BL21 (DE3),” <i>BMC Microbiology</i>, vol. 11, no. 1, p. 70, 2011.</p>
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<p>H.-J. Chang, P. Mayonove, A. Zavala, A. De Visch, P. Minard, M. Cohen-Gonsaud, and J. Bonnet, “A modular receptor platform to expand the sensing repertoire of bacteria,” <i>ACS Synthetic Biology</i>, vol. 7, no. 1, pp. 166–175, 2017.</p>
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<partinfo>BBa_K3718010 parameters</partinfo>
 
<partinfo>BBa_K3718010 parameters</partinfo>
 
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<h3>Reference</h3>
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<p> H. Waegeman, J. Beauprez, H. Moens, J. Maertens, M. De Mey, M. R. Foulquié-Moreno, J. J. Heijnen, D. Charlier, and W. Soetaert, “Effect of ICLR and ARCA knockouts on biomass formation and metabolic fluxes in escherichia coli K12 and its implications on understanding the metabolism of escherichia coli BL21 (DE3),” <i>BMC Microbiology</i>, vol. 11, no. 1, p. 70, 2011.</p>
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<p>H.-J. Chang, P. Mayonove, A. Zavala, A. De Visch, P. Minard, M. Cohen-Gonsaud, and J. Bonnet, “A modular receptor platform to expand the sensing repertoire of bacteria,” <i>ACS Synthetic Biology</i>, vol. 7, no. 1, pp. 166–175, 2017.</p>

Revision as of 06:55, 17 October 2021

Demonstrative circuit of tool kit part 2

GFP is produced and growth rate is restored in the presence of caffeine molecule. This acts as a proof of concept in our project. This part contains the plasmid insert of component II (cloning) of our toolkit.

800px-T--Hong_Kong_UCCKE--using_toolkit.jpeg

After the experiments of the Modular Receptor Platform (MRP) expression , and the transformation of the arcA and iclR genes into E. coli, which has its arcA and iclR knocked out before the transformation, have proven to be successful. We will use caffeine-sensitive MRP as a testing part to model the system. Caffeine will be used to homodimerize the receptors, and is expected to induce the expression of downstream genes. This model will be used to conduct three experiments to confirm the functionality of the tool. By cloning in an antibody VHH gene against caffeine and green fluorescent protein (GFP) as the desired gene to be expressed, we expect the platform is activated in the presence of caffeine to express GFP, arcA and iclR, which will result in an increase in growth rate and a visible green color under UV.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 120
    Illegal BglII site found at 994
    Illegal BglII site found at 3417
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 686
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1974



Reference

H. Waegeman, J. Beauprez, H. Moens, J. Maertens, M. De Mey, M. R. Foulquié-Moreno, J. J. Heijnen, D. Charlier, and W. Soetaert, “Effect of ICLR and ARCA knockouts on biomass formation and metabolic fluxes in escherichia coli K12 and its implications on understanding the metabolism of escherichia coli BL21 (DE3),” BMC Microbiology, vol. 11, no. 1, p. 70, 2011.

H.-J. Chang, P. Mayonove, A. Zavala, A. De Visch, P. Minard, M. Cohen-Gonsaud, and J. Bonnet, “A modular receptor platform to expand the sensing repertoire of bacteria,” ACS Synthetic Biology, vol. 7, no. 1, pp. 166–175, 2017.