Difference between revisions of "Talk:Catalog"
(New page: ==Software tools== Just the start of a list - *Sites for transcriptional regulators should be automatically identified for all promoters ...) |
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==Software tools== | ==Software tools== | ||
Just the start of a list - | Just the start of a list - | ||
| + | *Tool for marking parts to be included or not included in the distribution | ||
| + | **This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc. | ||
*Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters. | *Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters. | ||
*An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages. | *An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages. | ||
| − | *[[/Secondary structure predictor|Secondary structure predictor]] that can show a graphic of the predicted secondary structure for a | + | *[[/Secondary structure predictor|Secondary structure predictor]] that can show a graphic of the predicted secondary structure for a part. |
| + | **This should be done for all protein generators and terminators | ||
*A method for importing promoters (and other parts) from ecocyc (and other similar databases). | *A method for importing promoters (and other parts) from ecocyc (and other similar databases). | ||
Revision as of 14:16, 22 January 2009
Software tools
Just the start of a list -
- Tool for marking parts to be included or not included in the distribution
- This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
- Sites for transcriptional regulators should be automatically identified for all promoters (and maybe other parts), add any identified sites as features to the promoters.
- An RBS strength calculator should be available on RBS and coding sequence pages.
- Secondary structure predictor that can show a graphic of the predicted secondary structure for a part.
- This should be done for all protein generators and terminators
- A method for importing promoters (and other parts) from ecocyc (and other similar databases).