Difference between revisions of "Part:BBa K3657017"
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Broccoli is an aptamer that forms a stable secondary structure and binds the fluorogen DFHBI, which results in green fluorescence. The absence of BsmbI site allows cloning of this part with <a href="http://2018.igem.org/Team:Marburg/Part_Collection">Marburg Collection system</a>. The GUAGAG loop was introduced in order to allow PPR proteins (<a href="https://parts.igem.org/Part:BBa_K3657013">BBa_K3657013</a>) to bind to the part, since PPR can only bind single stranded RNA.
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Broccoli is an aptamer that forms a stable secondary structure and binds the fluorogen DFHBI, which results in green fluorescence. The absence of BsmbI site allows cloning of this part with <a href="http://2018.igem.org/Team:Marburg/Part_Collection">Marburg Collection system</a>. The GUAGAG loop was introduced in order to allow PPR protein specific to GUAGAG (<a href="https://parts.igem.org/Part:BBa_K3657013">BBa_K3657013</a>) to bind to the part, since PPR can only bind single stranded RNA.
 
<p>Due to the COVID pandemic we were not able to experimentally prove that this Broccoli modification binds DFHBI correctly <i>in vitro</i>.</p>
 
<p>Due to the COVID pandemic we were not able to experimentally prove that this Broccoli modification binds DFHBI correctly <i>in vitro</i>.</p>
 
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Revision as of 22:09, 27 October 2020


Broccoli Aptamer with added GUAGAG RNA Loop

This part is a modification of the original Broccoli aptamer. It was re-engineered to exclude the BsmbI cutting site and GUAGAG RNA loop.


Usage and Biology

Broccoli is an aptamer that forms a stable secondary structure and binds the fluorogen DFHBI, which results in green fluorescence. The absence of BsmbI site allows cloning of this part with Marburg Collection system. The GUAGAG loop was introduced in order to allow PPR protein specific to GUAGAG (BBa_K3657013) to bind to the part, since PPR can only bind single stranded RNA.

Due to the COVID pandemic we were not able to experimentally prove that this Broccoli modification binds DFHBI correctly in vitro.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]