Difference between revisions of "Part:BBa K3457051"
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<partinfo>BBa_K3457051 short</partinfo> | <partinfo>BBa_K3457051 short</partinfo> | ||
− | a | + | <p> This biological part is the expression sequence of Super-folder Green Fluorescent Protein, also called sfGFP. We use it in the experiment to test J23109, J23107 and J23100 promoters. </p> |
+ | |||
+ | ===Contribution=== | ||
+ | <h2><b>Group: QHFZ-China iGEM 2020</b></h2> | ||
+ | <h3><b>Author: Yixian Yang</b></h3> | ||
+ | <h3><b>Design</b></h3> | ||
+ | [[File:T--QHFZ-China--100-sfGFP.png|400px|thumb|left|Figure 1. The Schematic cartoon of the DNA construct of BBa_K3457051.]] | ||
+ | |||
+ | <p style="clear:left;"> This part was modified from [https://parts.igem.org/Part:BBa_K3457037 BBa_K3457037] T7-Olac-RBS-CAHS 106094 by Golden Gate technique.</p> | ||
+ | |||
+ | <h3><b>Documentation:</b></h3> | ||
+ | |||
+ | <h4><b>Protocol: </b></h4> | ||
+ | <p style="clear:left;"> We modified a frequently and widely used vector, pet28a+ and put this part into it (Fig. 2). Then we transformed the plasmid into <i>E. coli</i> BL21 strain. </p> | ||
+ | |||
+ | [[File:T--QHFZ-China--J2310-1.png|400px|thumb|left|Figure 2. The Schematic cartoon of the vector.]] | ||
+ | |||
+ | <p style="clear:left;"> We used the following protocol to detect fluorescence:<br> | ||
+ | (1) Pick clones which are in good condition and put them into 500 μL LB medium containing antibiotics. Shake them to | ||
+ | grow at 37℃ for 5~7 hours until the bacteria solution becomes turbid. <br> | ||
+ | (2) Add 2mM iPTG into 3 mL LB medium containing antibiotics. Add 3 μL of the bacteria solution mentioned in step 1 | ||
+ | to dilute the bacteria by the ratio of 1:1000. Shake the solution to grow the bacteria at 37℃ overnight.<br> | ||
+ | (3) The bacteria solution was centrifuged and the LB medium was removed. Then the bacteria was resuspended by PBS. | ||
+ | 100 μL such solution was put into a well of a 96-well palte. The GFP fluorescence and OD<sub>600</sub> were detected | ||
+ | by a microplate readers (Bio-Teck). The parameters are: exciting light: 488 nm, light reception: 520 nm, gain: 50. <br> | ||
+ | (4) The value of PBS was deducted from the result above. GFP / OD<sub>600</sub> was calculated.<br> | ||
+ | </p> | ||
+ | |||
+ | <h4><b>Results:</b></h4> | ||
+ | [[File:T--QHFZ-China--sfGFP.jpg|600px|thumb|left|Figure 3. Via a reporter, sfGFP, the expression function of the vector was verified.]] | ||
+ | <p style="clear:left;"> sfGFP was normally expressed. J23107 is a moderate promoter.</p> | ||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here |
Latest revision as of 02:23, 27 October 2020
J23107-Olac-RBS-sfGFP
This biological part is the expression sequence of Super-folder Green Fluorescent Protein, also called sfGFP. We use it in the experiment to test J23109, J23107 and J23100 promoters.
Contribution
Group: QHFZ-China iGEM 2020
Author: Yixian Yang
Design
This part was modified from BBa_K3457037 T7-Olac-RBS-CAHS 106094 by Golden Gate technique.
Documentation:
Protocol:
We modified a frequently and widely used vector, pet28a+ and put this part into it (Fig. 2). Then we transformed the plasmid into E. coli BL21 strain.
We used the following protocol to detect fluorescence:
(1) Pick clones which are in good condition and put them into 500 μL LB medium containing antibiotics. Shake them to
grow at 37℃ for 5~7 hours until the bacteria solution becomes turbid.
(2) Add 2mM iPTG into 3 mL LB medium containing antibiotics. Add 3 μL of the bacteria solution mentioned in step 1
to dilute the bacteria by the ratio of 1:1000. Shake the solution to grow the bacteria at 37℃ overnight.
(3) The bacteria solution was centrifuged and the LB medium was removed. Then the bacteria was resuspended by PBS.
100 μL such solution was put into a well of a 96-well palte. The GFP fluorescence and OD600 were detected
by a microplate readers (Bio-Teck). The parameters are: exciting light: 488 nm, light reception: 520 nm, gain: 50.
(4) The value of PBS was deducted from the result above. GFP / OD600 was calculated.
Results:
sfGFP was normally expressed. J23107 is a moderate promoter.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 11
Illegal NheI site found at 34
Illegal NheI site found at 978 - 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]