Difference between revisions of "Part:BBa K3482017"
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<partinfo>BBa_K3482017 short</partinfo>
 
<partinfo>BBa_K3482017 short</partinfo>
  
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This part was used to create a kill-switch based on temperature and on the condition of growth of our bacteria.
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IM2 immunity protein fused with an aTc sensible promoter and a heat-inducible ARN thermosensor.
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===Usage and Biology===
 
===Usage and Biology===
  
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The IM2 molecule  
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Colicin E2 is an endonuclease that cut on both single and double-stranded DNA. It has no specific cutting site. Colicin toxin are toxins that can be produced by E.coli and closely related bacteria. The IM2 molecule gives an immunity to the Colicin E2 toxin
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===Characterization===
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We tested this part with the  heat-repressible miniColicin toxin (BBa_K3482018) inserted on a plasmid.
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We inserted the heat-inducible RNA thermosensor upstream of the antitoxin genes in the plasmid pKC3. In order to demonstrate that the heat-inducible RNA thermosensor promotes the antitoxin synthesis and thus allows cells to grow in permissive conditions, we grew them at different temperatures and observed their viability. The backbone of the plasmid (pAND) and the plasmid pKC1 were used as controls
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Two different temperatures were chosen in order to test the permissive and non-permissive conditions, i.e. inside (37°C) and outside (≤25°C) the body, respectively (Figure 3). For this assessment no aTc or IPTG were used for induction.
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[[File:BBa K3482017 killswitchresults.png|800px]]
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Quantitative assessment of viability of E.coli Nissle 1917 containing the plasmids pAND (red), pKC1 (green), and pKC3 (blue) under permissive and non-permissive conditions, 37 °C (line) and 25 °C (solid line), respectively. Both conditions were tested without addition of aTc or IPTG. Viability is measured by the OD of the samples on the y-axis, as a function of time in hours on the x-axis. The lines denote the mean and the shade the standard deviation.
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At permissive temperature (37°C) the pKC3 containing cells grew a bit slower than the two controls, but their viability was not impaired. Indeed, after 10 hours the cells containing either pAND or pKC1 seemed to reach a plateau where the pKC3 cells were still growing. At lower temperature (25°C), the viability of pAND and pKC1 cells remains unchanged while pKC3 growth was significantly impaired.
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Thus we showed that the plasmid pKC3 containing the part BBa_K3482017 is able to control the viability of its host depending on the temperature.
  
  

Revision as of 23:47, 25 October 2020


aTc and heat-inducible IM2 antitoxin

IM2 immunity protein fused with an aTc sensible promoter and a heat-inducible ARN thermosensor.

Usage and Biology

Colicin E2 is an endonuclease that cut on both single and double-stranded DNA. It has no specific cutting site. Colicin toxin are toxins that can be produced by E.coli and closely related bacteria. The IM2 molecule gives an immunity to the Colicin E2 toxin

Characterization

We tested this part with the heat-repressible miniColicin toxin (BBa_K3482018) inserted on a plasmid. We inserted the heat-inducible RNA thermosensor upstream of the antitoxin genes in the plasmid pKC3. In order to demonstrate that the heat-inducible RNA thermosensor promotes the antitoxin synthesis and thus allows cells to grow in permissive conditions, we grew them at different temperatures and observed their viability. The backbone of the plasmid (pAND) and the plasmid pKC1 were used as controls Two different temperatures were chosen in order to test the permissive and non-permissive conditions, i.e. inside (37°C) and outside (≤25°C) the body, respectively (Figure 3). For this assessment no aTc or IPTG were used for induction.

BBa K3482017 killswitchresults.png

Quantitative assessment of viability of E.coli Nissle 1917 containing the plasmids pAND (red), pKC1 (green), and pKC3 (blue) under permissive and non-permissive conditions, 37 °C (line) and 25 °C (solid line), respectively. Both conditions were tested without addition of aTc or IPTG. Viability is measured by the OD of the samples on the y-axis, as a function of time in hours on the x-axis. The lines denote the mean and the shade the standard deviation.


At permissive temperature (37°C) the pKC3 containing cells grew a bit slower than the two controls, but their viability was not impaired. Indeed, after 10 hours the cells containing either pAND or pKC1 seemed to reach a plateau where the pKC3 cells were still growing. At lower temperature (25°C), the viability of pAND and pKC1 cells remains unchanged while pKC3 growth was significantly impaired. Thus we showed that the plasmid pKC3 containing the part BBa_K3482017 is able to control the viability of its host depending on the temperature.



Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal SpeI site found at 90
    Illegal PstI site found at 96
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal SpeI site found at 90
    Illegal PstI site found at 96
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 265
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal SpeI site found at 90
    Illegal PstI site found at 96
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal SpeI site found at 90
    Illegal PstI site found at 96
  • 1000
    COMPATIBLE WITH RFC[1000]