Difference between revisions of "Part:BBa K3139014:Experience"

Revision as of 18:59, 21 October 2019

This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

Applications of BBa_K3139014

Background

Composite part BBa_K3139014, J23100-fusion protein-B0015-J23106-TEVp-TEVp site-HasA-B0010, anti-Plasmodium system. We choose this part as the best composite part, because its function was the most superior among all the parts of the same type (Figure.3 Lane 3). It also provided significant data for our mathematic model which simulated different promoter combinations (shown in Figure.1) of anti-Plasmodium system and predicted the possibly most superior combination. the amount of both TEV protease and anti-Plasmodium fusion protein should be kept at a certain proportion to avoid a waste of cell resources. If the TEV protease is excessive, it shall be wasted though the fusion proteins are cleaved completely. If the fusion protein is excessive, it cannot be cleaved completely with insufficient TEV protease.

Figure.1 Recombinant plasmid used Figure.2 Mechanism of anti-Plasmodium system

1.Anti-Plasmodium fusion protein.

2.TEV protease with hasA signal peptide, unfolded and nonfunctioning.

3.1 and 2are secreted by has secretion complex.

4.Anti-Plasmodium fusion protein is cleaved by TEV protease and turns functioning.

5.HasA signal peptide is cutted off, the TEV protease is completely functioning. The protease is mostly folded and functioning when it is secreted out of the cell.

Characterization

We constructed a recombined plasmid vector pEXC-2 (Figure.1), transformed the plasmid into Serratia JCM11315, and cultured it in LB medium for 60h to obtain supernatant after ultrasonication. Then we purified our target His tagged protein by using Ni-NTA magnetic beads.

Then we made mass spectrometry analysis.

Results

The WB result shows several bands (Figure.3). We defined the smallest monomer protein band (7.2kd) completely produced by cutting as the representative of cutting effect, and the band of TEVp (29.5kDa) represents the promoter strength of TEVp. From the grayscale of the TEVp and monomer protein bands, we find out the cutting effect of the strongest promoter J23111 was weak than the second strong promoter J23106. It’s also supporting the results of our model that changing the strength of promoters can change the cutting effect and the concentration of single effectors in extracellular, providing theoretical support for the practical application of our project.

Figure.3 Cleavage effect under three promoters of TEVp.

Lane 1: protein purified from supernatant of bacteria liquid expressing TEVp with promoter J23110.

Lane 2: protein purified from supernatant of bacteria liquid expressing TEVp with promoter J23111.

Lane 3: protein purified from supernatant of bacteria liquid expressing TEVp with promoter J23106.

The mass spectrometry analysis (Figure.4) shows that His-A, the smallest component of the fusion protein, was detected.

Integration with model

Our model firstly ensured the most reasonable quantity proportion of TEV proteases and anti-Plasmodium fusion proteins. Then we supposed different secretion speed levels, obtained the most suitable combination of promoters in each condition. What surprised us is, one of these assumptions fitted our experiment well.

To see more details: NAU-CHINA-2019-wiki

User Reviews

UNIQd0cd299c1a8c0446-partinfo-00000000-QINU UNIQd0cd299c1a8c0446-partinfo-00000001-QINU