Difference between revisions of "Part:BBa K1033916"

Revision as of 08:32, 21 October 2019

amajLime, yellow-green chromoprotein

This chromoprotein from the coral Anemonia majano, amajLime (also known as amajCFP or amFP486), naturally exhibits strong color when expressed. The protein has an absorption maximum at 458 nm giving it a yellow-green color visible to the naked eye. Compared to many other chromoproteins, such as amilCP (BBa_K592009), amilGFP (BBa_K592010), spisPink (BBa_K1033932), asPink (BBa_K1033933) and aeBlue (BBa_K864401), the color development is slower. The color is readily observed in both LB or on agar plates after 24-48 hours of incubation. The protein amajLime has significant sequence homologies with proteins in the GFP family.

Usage and Biology

This part is useful as a reporter.

Source

Anemonia majano. The protein was first extracted and characterized by Matz et. al. under the name amFP486 (UniProtKB/Swiss-Prot: Q9U6Y6.1 GI:56749103). This version is codon optimized for E coli by Genscript.

Characterization

Team: UAlberta 2019
Summary of Contributions:
Team UAlberta repeated much of the same measurements conducted by Hong Kong-CUHK iGEM 2017 in order to provide corroboration of previously submitted data for the amajLime Chromoprotein. However, our extracted amajLime was contained in Tris-buffered Saline (50 mmol Tris-Cl, 150 mmol NaCl) and we conducted a quantum yield measurement according to established methods in [4].

Group: Hong Kong-CUHK iGEM 2017
Author: Yuet Ching Lin
Summary: Although amajLime is described as chromoprotein in main page, we characterised its spectral properties and found the max excitation and emission wavelength at 445 nm snd 485 nm respectively
Documentation:
Fluorescent properties of amajLime:

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Fig.1 Emission and Excitation spectra in blue and green respectively.

Group: Hong Kong-CUHK iGEM 2017
Author: Yuet Ching Lin
Summary: We measured the fluorescent signal of amajLime in buffers with different pH.
Documentation:
Charaterization of amajLime pH stabillity:

We transformed part BBa_K1033916 with constituitive promoter: J23100 in C41 and grew in 2XYT for 24 hours.. After purifying the amajLime by Ion Exchange Chromatography and Hydrophobic Interaction Chromatography, we measured the fluoresece (ex ,em ) of purified amajLime, which is diluted to 10µg/100µl (total 200µl) in triplicates, into different buffers (ranges from pH2 to pH12; Volume of amajLime:buffer = 1:4.3). To facilitate reproducibility of the experiment, we correlated the relative fluorescent intensity to an absolute fluorophore concentration by referring it to a standard curve of the corresponding fluorophores(Fluorescein) using the interlab study protocol. The result shows that the stability drops dramatically in pH condition below 6 and relatively stable in pH 6-10.

Fig.2 Vary pH attributed to different fluorescent intensity of amajLime.

References

[http://www.nature.com/nbt/journal/v17/n10/full/nbt1099_969.html] Matz, Mikhail V., et al. "Fluorescent proteins from nonbioluminescent Anthozoa species." Nature biotechnology 17.10 (1999): 969-973.

[http://www.pnas.org/content/102/36/12712.short] Henderson, J. Nathan, and S. James Remington. "Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano." Proceedings of the National Academy of Sciences of the United States of America 102.36 (2005): 12712-12717.

[http://www.ncbi.nlm.nih.gov/pubmed/18648549] Alieva, N. O., et al. 2008. Diversity and evolution of coral fluorescent proteins. PLoS One 3:e2680.

[1] P. J. Cranfill et al., “Quantitative assessment of fluorescent proteins,” Nat. Methods, vol. 13, no. 7, pp. 557–562, Jun. 2016.

Sequence and Features