Difference between revisions of "Part:BBa K2253000"
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<b>Figure 5</b>. Characterization of K2253000 expression strength. A. Growth curve and fluorescence | <b>Figure 5</b>. Characterization of K2253000 expression strength. A. Growth curve and fluorescence | ||
Revision as of 06:32, 21 October 2019
Constitutive P8 promoter and RBS composite
The P8 constitutive promoter is natively found in the genome of Lactococcus lactis [1]. Although the transcriptional efficiency of this promoter has been characterized and tested in Lactococcus lactis and other Gram-positive bacteria, its functionality in Gram-negative species such as E. coli has not been recorded in the literature. We have confirmed that E. coli transformed with a cassette plasmid containing the P8 promoter and E2-Crimson reporter is able to successfully express the E2-Crimson red fluorescent protein.
Usage and Biology
As a PhytoBrick compatible part containing the proper overhangs specified by the iGEM PhytoBrick standard, the P8 promoter can be assembled into a transcriptional unit via Golden Gate assembly to upregulate expression of a gene of interest in E. coli as well as L. lactis. For more information about the PhytoBrick standards set by iGEM, click here.
Experimental Design
To test if our Lactococcus lactis constitutive promoters function well within E. coli, we created a test cassette plasmid containing the E2-Crimson\ reporter gene inserted downstream of the P8 promoter using BsaI Golden Gate assembly. To create this test cassette, we used the P8 promoter part plasmid, E2-Crimson part plasmid, an M13 terminator part plasmid, connector part plasmids, and the pYTK095 vector as the backbone (Fig. 1). These part plasmids contained a distinct set of overhangs specified by the Lee/Dueber YTK Golden Gate Assembly standard [2].
Figure 1. Golden Gate assembly process of the P8 test cassette plasmid.
Top10 electrocompetent E. coli cells were transformed with the P8 cassette assembly and plated on LB + CAM plates. After one day of incubation at 37°C, there was growth of purple-blue colonies, which fluoresced red when placed under UV illumination (Fig. 2). The observed red fluorescence phenotype was likely due to the P8 promoter successfully directing expression of the E2-Crimson reporter gene. From this result, we concluded that the P8 constitutive promoter is indeed functional within E. coli and can thus be used to overexpress genes of interest in E. coli as well as L. lactis.
Figure 2. P8 cassette plasmid transformation plate under normal light (left) and UV illumination (right).
Characterization of the promoter in E. coli using GFP
By: iGEM2019 Team: Costa_Rica
In order to measure the expression strength of this part from Lactococcus in E. coli we placed a GFP and a terminator downstream of this sequence. The final construct designed for this characterization consisted on the following iGEM parts: K2253000+E0040+B0015. This sequence was ordered in a Twist Bioscience plasmid with ampicillin resistance and cloned into iGEM plasmid pSB1C3 with chloramphenicol resistance.
As reference for comparison of promoter strength, we also synthesized with Twist Bioscience three constructs with well characterized Anderson Promoters and the putative RBS that the reference article of this part indicated. However, when we cloned those parts in E. coli there was no GFP expression. That suggests that the putative RBS from this part is not annotated correctly.
Therefore, we used two other GFP expression cassettes (provided by iGEM 2016 interlab), which were regulated under a well characterized Anderson Promoter and an Elowitz RBS (B0034), as references for comparison. The strong expression cassette contained the J23101 promoter and the medium expression cassette the J23106 promoter. Both of this cassettes were cloned in the same iGEM backbone as the K2253000 characterization construct.
Figure 3. Visual differences between this part and standard biobricks for interlab iGEM2016
The three GFP cassettes and a negative control with no GFP expression (R0040) were cloned in E. coli dh5α. A growth curve was established in a multiplate well from an overnight culture diluted to OD600 0.05. The assay was done in triplicate. It was incubated at 37°C and 200 rpm for 8 hours in a MODELO, where it was automatically measured every hour.
Figure 4. Growth curve and fluorescence measurement of K2253000 with GFP.
Characterization of the promoter in E. coli using GFP and qPCR
Transformants used in the previous characterization were also tested for mRNA expression by qPCR. This allowed us to compare transcripts and protein expression, which is important as it was not possible to test only the promoter strength due to the lack of a correct annotated RBS in this part, mentioned before.
Each transformant with a different promoter in the GFP cassette (J23101, J23106, K2253000 and R0040) was inoculated in a 250mL Erlenmeyer with 60 mL LB supplemented with chloramphenicol. This was done in triplicate. It was incubated for 9 hours at 37°C and 200 rpm. Samples for GFP and OD600 quantification were taken every hour and measured in a MODELO plate reader.
For mRNA extraction, samples were taken every two hours. Only the samples with J23101 promoter and K2253000 were analyzed by qPCR in a LightCycler480 equipment.
Figure 5. Characterization of K2253000 expression strength. A. Growth curve and fluorescence
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
References
- Zhu, D. et al. Isolation of strong constitutive promoters from Lactococcus lactis subsp. Lactis N8. FEMS Microbiol Lett. 363(16): pii: fnv107 (2015).
- Lee, M. E. et al. A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly. ACS Synth. Biol. 4(9): 975-86 (2015).