Difference between revisions of "Part:BBa K1614000"

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[[Image:T--CCU_Taiwan--characterize-sum(2).jpg|100px|frame|left|Figure 1: '''The Coomassie Blue staining of protein expression iPTG-induced BL21(ED3) at different time points and the BSA protein standard.''' The total protein expression in IPTG induced BL21(DE3) at 4, 8, 10 ,12, 14, and 16 hr were shown. The 35, 70, 210, 350 ng BSA was loaded as standard.]]
 
[[Image:T--CCU_Taiwan--characterize-sum(2).jpg|100px|frame|left|Figure 1: '''The Coomassie Blue staining of protein expression iPTG-induced BL21(ED3) at different time points and the BSA protein standard.''' The total protein expression in IPTG induced BL21(DE3) at 4, 8, 10 ,12, 14, and 16 hr were shown. The 35, 70, 210, 350 ng BSA was loaded as standard.]]
  
[[Image:T--CCU_Taiwan--characterize-BSAcurve.jpg|100px|frame|center|Figure 2: '''The simple linear regression of BSA protein standard.'''The 35, 70, 210, 350 ng BSA was used as protein standard to perform simple linear regression with image intensity.]]
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[[Image:T--CCU_Taiwan--characterize-BSAcurve.jpg|100px|frame|left|Figure 2: '''The simple linear regression of BSA protein standard.'''The 35, 70, 210, 350 ng BSA was used as protein standard to perform simple linear regression with image intensity.]]
 
[[Image:T--CCU_Taiwan--characterize-Cas12a-curve.jpg|100px|frame|left|Figure 3: '''The quantification of LbCas12 protein expression at different time points of ITGP induction.''']]
 
[[Image:T--CCU_Taiwan--characterize-Cas12a-curve.jpg|100px|frame|left|Figure 3: '''The quantification of LbCas12 protein expression at different time points of ITGP induction.''']]
  

Revision as of 11:13, 20 October 2019

T7 promoter for expression of functional RNA

Minimal promoter derived from T7 phage promoter.


Usage and Biology

This T7 promoter derivate is especially useful for the use in in vitro applications. The G which is the startpoint for transcription is included in the promoter sequence.

Characterize the T7 promoter – CCU-Taiwan

In our pHMT-LbCas12a construct, we included the T7 promoter (iGEM15_Heilberg) to induce the LbCas12a protein expression. To characterize this ability of T7 promoter, we transformed pHMT-LbCas12a into E.coli BL21(DE3), which harbors a Lac Operon regulated T7 polymerase. We first expanded the transformed BL21(DE3) cells by TB medium at 37℃. When O.D.600 approach 0.6 ~ 0.8, we induced T7 polymerase expression by adding 0.2 mM IPTG to TB medium and shift BL21(DE3) to 16℃ for 16 hr.

The IPTG treatment increased the T7 polymerase expression in BL21(DE3) as time goes on, which in turn activate T7 promoter. To examine whether the T7 promoter was activated, we collected IPTG-induced BL21(DE3) every two hour, and performed SDS-PAGE assay and Coomassie Blue staining to detect LbCas12a protein expression. In brief, 1 ml of BL21(DE3) is harvested every two hour and centrifuged to cell pellet. The cell pellet was then sonicated, and soluble fraction in supernatant was collected by centrifuging at 13200 rpm 30 min. Total 1 ml supernatant, which equal to protein expression in 1ml BL21(DE3), was used in SDS-PAGE and Coomassie Blue staining. To calculate the protein expression at different time points, we quantity the image intensity of LbCas12a protein and BSA standards by Image J.

  1. Coomassie blue staining shows the LbCas12a protein expression was absent at 0 hr and increased as time goes on. This result indicated that T7 promoter can be activated by IPTG-induced T7 polymerase (Figure 1).
  2. We then used BSA standard to quantify the LbCas12a protein expression. The simple linear regression of BSA protein expression standard is shown in Figure 2, while the original image intensity detected by Image J is shown in table 1.
  3. Finally, we quantify the LbCas12 expression by conversing the intensity to concentration through BSA standard regression (Figure 3).
Figure 1: The Coomassie Blue staining of protein expression iPTG-induced BL21(ED3) at different time points and the BSA protein standard. The total protein expression in IPTG induced BL21(DE3) at 4, 8, 10 ,12, 14, and 16 hr were shown. The 35, 70, 210, 350 ng BSA was loaded as standard.
Figure 2: The simple linear regression of BSA protein standard.The 35, 70, 210, 350 ng BSA was used as protein standard to perform simple linear regression with image intensity.
Figure 3: The quantification of LbCas12 protein expression at different time points of ITGP induction.


Table 1: Image quantification BSA standard of Figure 1
BSA (ng) Background intensity BSA intensity BSA - Background intensity
350 2407241 1258862 1148379
210 1589271 962468 626803
70 1544912 904623 180999
35 1042670 861671 129877


Table 1: Table 2: Image quantification LbCas12a expression of Figure 1
Time (hours) Background intensity LbCas12a intensity LbCas12a - Background intensity LbCas12a (ng) LbCas12a (µg/mL)
0hr +IPTG 696645 691258 5387 8.937 2.554
4hr +IPTG 900536 760105 140431 50.098 14.314
8hr +IPTG 925618 789444 136174 48.801 13.943
10hr +IPTG 913959 791540 122419 44.608 12.745
12hr +IPTG 956220 770282 185938 63.968 18.277
14hr +IPTG 976568 761481 215087 72.853 20.815
16hr +IPTG 1064337 764543 299794 98.671 28.192
16hr Ctrl 924162 743361 180801 62.403 17.829


Conclusion: The quantification of LbCas12a protein expression by BSA standard shows that the Cas12 protein is increased at different time points, which confirmed that the T7 promoter is functional in our construct.