Difference between revisions of "Part:BBa K3102043"
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<html><style type="text/css">@import url('https://themes.googleusercontent.com/fonts/css?kit=fpjTOVmNbO4Lz34iLyptLUXza5VhXqVC6o75Eld_V98');ol{margin:0;padding:0}table td,table th{padding:0}.c9{background-color:#ffffff;color:#45818e;font-weight:400;text-decoration:none;vertical-align:baseline;font-size:10pt;font-family:"Arial";font-style:normal}.c3{color:#44546a;font-weight:400;text-decoration:none;vertical-align:baseline;font-size:9pt;font-family:"Calibri";font-style:italic}.c1{padding-top:0pt;padding-bottom:10pt;line-height:1.0;orphans:2;widows:2;text-align:center;height:11pt}.c4{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:center;height:11pt}.c0{color:#000000;font-weight:400;text-decoration:none;vertical-align:baseline;font-size:11pt;font-family:"Calibri";font-style:normal}.c14{padding-top:0pt;padding-bottom:8pt;line-height:1.0791666666666666;orphans:2;widows:2;text-align:left;height:11pt}.c5{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;page-break-after:avoid;orphans:2;widows:2;text-align:center}.c12{padding-top:0pt;padding-bottom:10pt;line-height:1.0;orphans:2;widows:2;text-align:center}.c6{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:justify}.c8{color:#000000;text-decoration:none;vertical-align:baseline;font-size:18pt;font-family:"Calibri";font-style:normal}.c15{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:center}.c10{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:left}.c13{background-color:#ffffff;font-size:10pt;font-family:"Arial";color:#45818e;font-weight:400}.c2{background-color:#ffffff;max-width:453.6pt;padding:70.8pt 70.8pt 70.8pt 70.8pt}.c7{font-weight:700}.c11{font-style:italic}.title{padding-top:24pt;color:#000000;font-weight:700;font-size:36pt;padding-bottom:6pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}.subtitle{padding-top:18pt;color:#666666;font-size:24pt;padding-bottom:4pt;font-family:"Georgia";line-height:1.0791666666666666;page-break-after:avoid;font-style:italic;orphans:2;widows:2;text-align:left}li{color:#000000;font-size:11pt;font-family:"Calibri"}p{margin:0;color:#000000;font-size:11pt;font-family:"Calibri"}h1{padding-top:24pt;color:#000000;font-weight:700;font-size:24pt;padding-bottom:6pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h2{padding-top:18pt;color:#000000;font-weight:700;font-size:18pt;padding-bottom:4pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h3{padding-top:14pt;color:#000000;font-weight:700;font-size:14pt;padding-bottom:4pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h4{padding-top:12pt;color:#000000;font-weight:700;font-size:12pt;padding-bottom:2pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h5{padding-top:11pt;color:#000000;font-weight:700;font-size:11pt;padding-bottom:2pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h6{padding-top:10pt;color:#000000;font-weight:700;font-size:10pt;padding-bottom:2pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}</style><p class="c15"><span class="c8 c7">Comparison of lactate secretion between engineered and non-engineered bacteria </span></p><p class="c4"><span class="c7 c8"></span></p><p class="c6"><span class="c7">Aims: </span><span>An important step in our system in the optimization of lactate secretion by </span><span class="c11">E. coli</span><span>. Indeed, lactate constitute the energetic substrate of </span><span class="c11">S. oneidensis</span><span>&nbsp;and thus an essential element to the generation of electricity. </span><span>Consequently, we wanted to compare lactate secretion between engineered and non-engineered bacteria.</span></p><p class="c6"><span class="c7">Method:</span><span class="c13">&nbsp;</span><span class="c0">Lactate detection kit (Libios K-DATE Kit) was used as described in &ldquo;Protocol: Lactate Detection&rdquo; and the following measurement were recovered:</span></p><p class="c5"><span style="overflow: hidden; display: inline-block; margin: 0.00px 0.00px; border: 0.00px solid #000000; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px); width: 371.08px; height: 292.87px;"><img alt="" src="images/image2.png" style="width: 371.08px; height: 292.87px; margin-left: 0.00px; margin-top: 0.00px; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px);" title=""></span></p><p class="c12"><span class="c3">Figure 1: Evolution of lactate concentration Values comparison between Control and the optimized E.coli</span></p><p class="c1"><span class="c3"></span></p><p class="c10"><span class="c0">To have a better view of the efficiency of our modified bacteria, we calculated the following ratios:</span></p><p class="c5"><span style="overflow: hidden; display: inline-block; margin: 0.00px 0.00px; border: 0.00px solid #000000; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px); width: 387.19px; height: 281.05px;"><img alt="" src="images/image1.png" style="width: 387.19px; height: 281.05px; margin-left: 0.00px; margin-top: 0.00px; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px);" title=""></span></p><p class="c12"><span class="c3">Figure 2: Evolution of lactate concentration ratio between control and modified bacteria, E.coli</span></p><p class="c1"><span class="c3"></span></p><p class="c4"><span class="c0"></span></p><p class="c10"><span class="c0">These data shows clearly the efficiency of the modified organism to secrete more lactate. </span></p><p class="c14" id="h.qtvsgj652dwv"><span class="c0"></span></p></html>
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<html><style type="text/css">@import url('https://themes.googleusercontent.com/fonts/css?kit=fpjTOVmNbO4Lz34iLyptLUXza5VhXqVC6o75Eld_V98');ol{margin:0;padding:0}table td,table th{padding:0}.c9{background-color:#ffffff;color:#45818e;font-weight:400;text-decoration:none;vertical-align:baseline;font-size:10pt;font-family:"Arial";font-style:normal}.c3{color:#44546a;font-weight:400;text-decoration:none;vertical-align:baseline;font-size:9pt;font-family:"Calibri";font-style:italic}.c1{padding-top:0pt;padding-bottom:10pt;line-height:1.0;orphans:2;widows:2;text-align:center;height:11pt}.c4{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:center;height:11pt}.c0{color:#000000;font-weight:400;text-decoration:none;vertical-align:baseline;font-size:11pt;font-family:"Calibri";font-style:normal}.c14{padding-top:0pt;padding-bottom:8pt;line-height:1.0791666666666666;orphans:2;widows:2;text-align:left;height:11pt}.c5{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;page-break-after:avoid;orphans:2;widows:2;text-align:center}.c12{padding-top:0pt;padding-bottom:10pt;line-height:1.0;orphans:2;widows:2;text-align:center}.c6{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:justify}.c8{color:#000000;text-decoration:none;vertical-align:baseline;font-size:18pt;font-family:"Calibri";font-style:normal}.c15{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:center}.c10{padding-top:0pt;padding-bottom:8pt;line-height:1.0666666666666667;orphans:2;widows:2;text-align:left}.c13{background-color:#ffffff;font-size:10pt;font-family:"Arial";color:#45818e;font-weight:400}.c2{background-color:#ffffff;max-width:453.6pt;padding:70.8pt 70.8pt 70.8pt 70.8pt}.c7{font-weight:700}.c11{font-style:italic}.title{padding-top:24pt;color:#000000;font-weight:700;font-size:36pt;padding-bottom:6pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}.subtitle{padding-top:18pt;color:#666666;font-size:24pt;padding-bottom:4pt;font-family:"Georgia";line-height:1.0791666666666666;page-break-after:avoid;font-style:italic;orphans:2;widows:2;text-align:left}li{color:#000000;font-size:11pt;font-family:"Calibri"}p{margin:0;color:#000000;font-size:11pt;font-family:"Calibri"}h1{padding-top:24pt;color:#000000;font-weight:700;font-size:24pt;padding-bottom:6pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h2{padding-top:18pt;color:#000000;font-weight:700;font-size:18pt;padding-bottom:4pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h3{padding-top:14pt;color:#000000;font-weight:700;font-size:14pt;padding-bottom:4pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h4{padding-top:12pt;color:#000000;font-weight:700;font-size:12pt;padding-bottom:2pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h5{padding-top:11pt;color:#000000;font-weight:700;font-size:11pt;padding-bottom:2pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}h6{padding-top:10pt;color:#000000;font-weight:700;font-size:10pt;padding-bottom:2pt;font-family:"Calibri";line-height:1.0791666666666666;page-break-after:avoid;orphans:2;widows:2;text-align:left}</style><p class="c15"><span class="c8 c7">Comparison of lactate secretion between engineered and non-engineered bacteria </span></p><p class="c4"><span class="c7 c8"></span></p><p class="c6"><span class="c7">Aims: </span><span>An important step in our system in the optimization of lactate secretion by </span><span class="c11">E. coli</span><span>. Indeed, lactate constitute the energetic substrate of </span><span class="c11">S. oneidensis</span><span>&nbsp;and thus an essential element to the generation of electricity. </span><span>Consequently, we wanted to compare lactate secretion between engineered and non-engineered bacteria.</span></p><p class="c6"><span class="c7">Method:</span><span class="c13">&nbsp;</span><span class="c0">Lactate detection kit (Libios K-DATE Kit) was used as described in &ldquo;Protocol: Lactate Detection&rdquo; and the following measurement were recovered:</span></p><p class="c5"><span style="overflow: hidden; display: inline-block; margin: 0.00px 0.00px; border: 0.00px solid #000000; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px); width: 371.08px; height: 292.87px;"><img alt="" src="https://static.igem.org/mediawiki/parts/6/6c/T--Ionis_Paris--image1_part43.jpg" style="width: 371.08px; height: 292.87px; margin-left: 0.00px; margin-top: 0.00px; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px);" title=""></span></p><p class="c12"><span class="c3">Figure 1: Evolution of lactate concentration Values comparison between Control and the optimized E.coli</span></p><p class="c1"><span class="c3"></span></p><p class="c10"><span class="c0">To have a better view of the efficiency of our modified bacteria, we calculated the following ratios:</span></p><p class="c5"><span style="overflow: hidden; display: inline-block; margin: 0.00px 0.00px; border: 0.00px solid #000000; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px); width: 387.19px; height: 281.05px;"><img alt="" src="images/image1.png" style="width: 387.19px; height: 281.05px; margin-left: 0.00px; margin-top: 0.00px; transform: rotate(0.00rad) translateZ(0px); -webkit-transform: rotate(0.00rad) translateZ(0px);" title=""></span></p><p class="c12"><span class="c3">Figure 2: Evolution of lactate concentration ratio between control and modified bacteria, E.coli</span></p><p class="c1"><span class="c3"></span></p><p class="c4"><span class="c0"></span></p><p class="c10"><span class="c0">These data shows clearly the efficiency of the modified organism to secrete more lactate. </span></p><p class="c14" id="h.qtvsgj652dwv"><span class="c0"></span></p></html>

Revision as of 09:15, 20 October 2019


Lactate production (ldhA, lldP, ACS operon)

This "lactate production" composite part is composed of Lactate dehydrogenase (LdhA):BBa_K3102026 and lactate permease (LldP):BBa_K3102027 sequences. This part increases the production and secretion of D-Lactate in the extracellular media. The LDHA enzyme catalyse the interconversion of pyruvate to L-lactate with simultaneous conversion of NADH to NAD+.

This composite part also constains the ACS operon:BBa_K3102028, composed of three genes: actP (Transports acetate), acs (catalyzes the conversion of acetate into acetyl-CoA), and yfcH (epimerase). It allows for the uptake of acetate molecules in order for the bacteria to do correctly its metabolism and survive.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1478
    Illegal XhoI site found at 3404
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 489
    Illegal AgeI site found at 1614
    Illegal AgeI site found at 2077
    Illegal AgeI site found at 2515
    Illegal AgeI site found at 2674
    Illegal AgeI site found at 2686
    Illegal AgeI site found at 3833
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 219
    Illegal SapI.rc site found at 6698


Comparison of lactate secretion between engineered and non-engineered bacteria

Aims: An important step in our system in the optimization of lactate secretion by E. coli. Indeed, lactate constitute the energetic substrate of S. oneidensis and thus an essential element to the generation of electricity. Consequently, we wanted to compare lactate secretion between engineered and non-engineered bacteria.

Method: Lactate detection kit (Libios K-DATE Kit) was used as described in “Protocol: Lactate Detection” and the following measurement were recovered:

Figure 1: Evolution of lactate concentration Values comparison between Control and the optimized E.coli

To have a better view of the efficiency of our modified bacteria, we calculated the following ratios:

Figure 2: Evolution of lactate concentration ratio between control and modified bacteria, E.coli

These data shows clearly the efficiency of the modified organism to secrete more lactate.