Difference between revisions of "Part:BBa K2983023"

Revision as of 14:57, 19 October 2019 (view source) Anthor91 (Talk | contribs) (→‎Usage and Biology) ← Older edit		Revision as of 17:42, 19 October 2019 (view source) TomZaplana (Talk | contribs) Newer edit →
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	Blue triangle: SapI fixation site (GCTCTTC)		Blue triangle: SapI fixation site (GCTCTTC)
−	Red triangle : BsaI fixation site (GAGACC)	+	Red triangle: BsaI fixation site (GGTCTC on complementary strand)
−	Grey circle : overhang formed by SapI after cutting (GGT)	+	Grey circle: overhang formed by SapI after cutting (GGT)
−	Orange circle: overhang formed by BasI  after cutting (GCTT)	+	Orange circle: overhang formed by BsaI after cutting (GCTT)
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	[1] Pollak B, Cerda A, Delmans M, Álamos S, Moyano T, West A, Gutiérrez RA, Patron NJ, Federici F, Haseloff J. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytol (2019) 222, 628-640.		[1] Pollak B, Cerda A, Delmans M, Álamos S, Moyano T, West A, Gutiérrez RA, Patron NJ, Federici F, Haseloff J. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytol (2019) 222, 628-640.
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Revision as of 17:42, 19 October 2019

Loop Omega-E

This part is a Loop Type IIS Golden gate adapter that contains a BsaI and a SapI restriction sites.

Usage and Biology

The Loop Type IIS cloning sites (triangles in figures 1 and 2) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figures 1 and 2).

A total of 50 combinations are theoretically possible and this part is one of them: the loop Omega-E (Figure 2).

Blue triangle: SapI fixation site (GCTCTTC)

Red triangle: BsaI fixation site (GGTCTC on complementary strand)

Grey circle: overhang formed by SapI after cutting (GGT)

Orange circle: overhang formed by BsaI after cutting (GCTT)

This part was used to define the Loop assembly system dedicated to the oleaginous yeast Yarrowia lipolytica (for details visit https://2019.igem.org/Team:Evry_Paris-Saclay/Design)

References

[1] Pollak B, Cerda A, Delmans M, Álamos S, Moyano T, West A, Gutiérrez RA, Patron NJ, Federici F, Haseloff J. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytol (2019) 222, 628-640.

Sequence and Features