Difference between revisions of "Part:BBa K2983024"
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===Usage and Biology===
 
===Usage and Biology===
  
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The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop E-Alpha is as fellow :  
+
The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop E-Alpha is as fellow: GGTCTCAGCTTAATGTGAAGAGC
  
 
[[File:T--Evry Paris-Saclay--Loop E-Alpha.png|300px|thumb|left| Figure 1:Loop E-Alpha structure]]
 
[[File:T--Evry Paris-Saclay--Loop E-Alpha.png|300px|thumb|left| Figure 1:Loop E-Alpha structure]]

Revision as of 14:11, 19 October 2019


Loop E-Alpha

This part is a Loop Type IIS Golden gate adapter that contains a BsaI and a SapI restriction sites.

Usage and Biology

The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop E-Alpha is as fellow: GGTCTCAGCTTAATGTGAAGAGC

Figure 1:Loop E-Alpha structure


Blue triangle: SapI fixation site (GCTCTTC)

Red triangle : BsaI fixation site (GAGACC)

Blue circle : overhang formed by SapI after cutting (ATG)

Orange circle: overhang formed by BasI after cutting (GCTT)



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1
    Illegal SapI.rc site found at 17