Difference between revisions of "Part:BBa K3185006"

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==Result==
 
==Result==
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[[File:191008 Dot Blot.png|300px|thumb|left|Fig.2 Plastic-binding protein binding to PET film
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[[File:191008 Dot Blot.png|300px|thumb|left|Fig.1 Plastic-binding protein binding to PET film
 
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A 3µL of protein solution dropped on PET film, then left for 20min.  Then the film was washed in TBST for 5min x3, then placed with Anti-His-tag-HRP conjugated for 1h.  ECL substrate was added, then chemiluminescence was imaged by LAS-3000.  The exposure time is 6min.]]
 
A 3µL of protein solution dropped on PET film, then left for 20min.  Then the film was washed in TBST for 5min x3, then placed with Anti-His-tag-HRP conjugated for 1h.  ECL substrate was added, then chemiluminescence was imaged by LAS-3000.  The exposure time is 6min.]]
 
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[[File:Cloth dot blot dry.png|300px|thumb|left|Fig.3a Cloth dot blot by fluorescent plastic-binding protein before washing.
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[[File:Cloth dot blot dry.png|300px|thumb|left|Fig.2a Cloth dot blot by fluorescent plastic-binding protein before washing.
 
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The dilution collection of each protein was dropped on PET cloth, then left for 20min.  The protein fluorescent was imaged by LAS-3000.  The exposure time is 10sec.]]
 
The dilution collection of each protein was dropped on PET cloth, then left for 20min.  The protein fluorescent was imaged by LAS-3000.  The exposure time is 10sec.]]
 
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[[File:Cloth Dot Blot washed.png|300px|thumb|left|Fig.3b Cloth dot blot by fluorescent plastic-binding protein after washing.
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[[File:Cloth Dot Blot washed.png|300px|thumb|left|Fig.2b Cloth dot blot by fluorescent plastic-binding protein after washing.
 
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The dilution collection of each protein was dropped on PET cloth, then left for 20min.  The cloth was washed in TBST for 5min x3, then protein fluorescent was imaged by LAS-3000.  The exposure time is 10sec.]]
 
The dilution collection of each protein was dropped on PET cloth, then left for 20min.  The cloth was washed in TBST for 5min x3, then protein fluorescent was imaged by LAS-3000.  The exposure time is 10sec.]]
 
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[[File:Cloth blot graph.png|300px|thumb|left|Fig.4 Percentage of protein retention on PET cloth
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[[File:Cloth blot graph.png|300px|thumb|left|Fig.3 Percentage of protein retention on PET cloth
 
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As shown above, our fluorescent plastic-binding proteins bind to PET cloth. and stay even they are washed.  In order to demonstrate in a more outstanding way, we took the movie that is shown below.
 
As shown above, our fluorescent plastic-binding proteins bind to PET cloth. and stay even they are washed.  In order to demonstrate in a more outstanding way, we took the movie that is shown below.
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[[File:Fig GFP microscope.png|300px|thumb|left|Fig.5 Plastic-binding proteins also bind to PET fiber
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[[File:Fig GFP microscope.png|300px|thumb|left|Fig.4 Plastic-binding proteins also bind to PET fiber
 
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PET fibers were soaked in each protein solution, then washed in TBST for 5min x3.  Fluorescent was observed in 460nm exciting light and imaged with 0.25sec exposure time.  Magnification is 10x.
 
PET fibers were soaked in each protein solution, then washed in TBST for 5min x3.  Fluorescent was observed in 460nm exciting light and imaged with 0.25sec exposure time.  Magnification is 10x.
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[[File:Fiber CBB.png|300px|thumb|left|Fig.6a SDS-PAGE gel for quantification of amounts of proteins bind to PET fiber
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[[File:Fiber CBB.png|300px|thumb|left|Fig.5a SDS-PAGE gel for quantification of amounts of proteins bind to PET fiber
 
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20cm of PET fibers were soaked in protein solutions, then washed in TBST for 5min three times.  Washed fibers were soaked in 50µL of 2x SDS sample buffer.  Bounded proteins were eluted with boiling. SDS-PAGE for 40min in 200V. CBB stained.
 
20cm of PET fibers were soaked in protein solutions, then washed in TBST for 5min three times.  Washed fibers were soaked in 50µL of 2x SDS sample buffer.  Bounded proteins were eluted with boiling. SDS-PAGE for 40min in 200V. CBB stained.
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[[File:fiber graph.png|300px|thumb|left|Fig.6b BaCBM2 bind most to PET fiber
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[[File:fiber graph.png|300px|thumb|left|Fig.5b BaCBM2 bind most to PET fiber
 
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  SDS-PAGE’s gel band intensity quantified with ImageJ.  The y-axis shows amounts of protein which bind to 20cm PET fiber.]]
 
  SDS-PAGE’s gel band intensity quantified with ImageJ.  The y-axis shows amounts of protein which bind to 20cm PET fiber.]]
 
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[[File:191001 SPYt-SPYC 2.png|300px|thumb|left|Fig. 10 Isopeptide bond formation between Plastic binding proteins and Encapsulin.]]
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[[File:191001 SPYt-SPYC 2.png|300px|thumb|left|Fig.6 Isopeptide bond formation between Plastic binding proteins and Encapsulin.
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3µL of SpyCatcher-Plastic-binding protein (SpyC-PBP) solution and 3µL of SpyTag inserted TmEncapsulin (SpyTmEnc) solution was mixed, then placed for 16h at room temperature.  Then 6µL of 2x SDS sample buffer was added.  10µL of each sample was loaded.  SDS-PAGE for 30min in 200V.  The gel was CBB stained.
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==References==  
 
==References==  

Revision as of 11:24, 19 October 2019


SPYCatcher -> sfGFP -> LCI KR-2

Usage and Biology

LCI is a protein from Bacillus subtili. The paper shows that it can bind to polypropylene(PP)[1]. The paper shows the improved variant, LCI-KR2(Y29R and G35R; variant KR-2)[2]. Its affinity is 5.4±0.5 times stronger than natural LCI.

We used LCI-KR2 for binding protein to PP. We inserted superfolder GFP (sfGFP) whose folding interval is shortened by improving natural GFP on the N-terminus of LCI (BBa_I746916). By doing so we wanted to do the binding assay with fluorescence. Moreover, we put SpyCatcher(BBa_K1159200)[ on N-terminus of sfGFP because we used SpyTag/SpyCatcher system to bind it to other parts.

This part has four tags. First is 6×His-tag inserted on the N-terminus of SpyC for protein purification. Second is MYC-tag inserted between sfGFP and Spy-Catcher to detect it by using the antibody. The third is a TEV protease site and we put it into two regions because it was used for protein purification in the paper[3].

We inserted it into the site between the BamHI site on the pGEX11-a and Ndel site. We used BL21 (DE3) for gene expression. We used Ni-NTA Agarose for purification. After that, we confirmed the molecular weight of LCI by using SDS-PAGE. The result is shown below.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NotI site found at 1174
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 460

Purification


Expression

  • Cells were grown in 200ml LB media (100μg/ml Ampicillin) at 37oC shaking at 140 rpm to an OD600 of 0.5, verifying via a spectrophotometer.
  • Protein was expressed in 0.1mM IPTG for 2hours.

SDS-PAGE

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Result

Fig.1 Plastic-binding protein binding to PET film
A 3µL of protein solution dropped on PET film, then left for 20min. Then the film was washed in TBST for 5min x3, then placed with Anti-His-tag-HRP conjugated for 1h. ECL substrate was added, then chemiluminescence was imaged by LAS-3000. The exposure time is 6min.



Fig.2a Cloth dot blot by fluorescent plastic-binding protein before washing.
The dilution collection of each protein was dropped on PET cloth, then left for 20min. The protein fluorescent was imaged by LAS-3000. The exposure time is 10sec.



Fig.2b Cloth dot blot by fluorescent plastic-binding protein after washing.
The dilution collection of each protein was dropped on PET cloth, then left for 20min. The cloth was washed in TBST for 5min x3, then protein fluorescent was imaged by LAS-3000. The exposure time is 10sec.



Fig.3 Percentage of protein retention on PET cloth
As shown above, our fluorescent plastic-binding proteins bind to PET cloth. and stay even they are washed. In order to demonstrate in a more outstanding way, we took the movie that is shown below.



Fig.4 Plastic-binding proteins also bind to PET fiber
PET fibers were soaked in each protein solution, then washed in TBST for 5min x3. Fluorescent was observed in 460nm exciting light and imaged with 0.25sec exposure time. Magnification is 10x.



Fig.5a SDS-PAGE gel for quantification of amounts of proteins bind to PET fiber
20cm of PET fibers were soaked in protein solutions, then washed in TBST for 5min three times. Washed fibers were soaked in 50µL of 2x SDS sample buffer. Bounded proteins were eluted with boiling. SDS-PAGE for 40min in 200V. CBB stained.



Fig.5b BaCBM2 bind most to PET fiber
SDS-PAGE’s gel band intensity quantified with ImageJ. The y-axis shows amounts of protein which bind to 20cm PET fiber.



Fig.6 Isopeptide bond formation between Plastic binding proteins and Encapsulin.
3µL of SpyCatcher-Plastic-binding protein (SpyC-PBP) solution and 3µL of SpyTag inserted TmEncapsulin (SpyTmEnc) solution was mixed, then placed for 16h at room temperature. Then 6µL of 2x SDS sample buffer was added. 10µL of each sample was loaded. SDS-PAGE for 30min in 200V. The gel was CBB stained.

References

1 Rübsam, K., Stomps, B., Böker, A., Jakob, F., and Schwaneberg, U. (2017).
Anchor peptides: A green and versatile method for polypropylene functionalization.
Polymer (Guildf). 116, 124–132.

2 Rübsam, K., Davari, M.D., Jakob, F., and Schwaneberg, U. (2018).
KnowVolution of the polymer-binding peptide LCI for improved polypropylene binding.
Polymers (Basel). 10, 1–12.

3 Rübsam, K., Weber, L., Jakob, F., and Schwaneberg, U. (2018).
Directed evolution of polypropylene and polystyrene binding peptides.
Biotechnol. Bioeng. 115, 321–330.