Difference between revisions of "Part:BBa K3202069"

 
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<partinfo>BBa_K3202069 short</partinfo>
 
<partinfo>BBa_K3202069 short</partinfo>
  
This composite part is to test the function of recombinase-toxin-bistable system. In our study,  we are aiming to design a bistable system to achieve zero basal expression in the absence of any inducer while ensuring constant transcriptional capacities and induction rates among promoters. The double bistable system combines small RNA-mediated inhibition of translation with the translational coupling of a repressor to the gene of interest. In our system, we have transcriptional repressors tetR expressed through the inducible promoter but translationally inhibited by the MicC sRNA1 respectively. Since RBS2 and RBS3 is directly inhibited by sRNA while they initiates the transcription of the two repressors, the gene of interest is translationally coupled to the repressor gene while three promoters which produces the inhibitory sRNA are targeted by their corresponding repressors.  Therefore, repressors and sRNA are mutually inhibitory. Within one single layer of the bistable system, the transcriptional factor is turned on, pBAD initiates the expression of tetR, which raises the concentration of tetR and thereby exerts greater inhibition on PR1 and therefore decreases the concentration of sRNA1. As sRNA1 is inhibited the inhibitory effect it exerts on tetR accordingly decreases, therefore the recombinase is expressed through the first layer, and vice versa. Nevertheless, given that the expression of LacI inhibits PR1, even if the recombinase is expressed PR1 can be flipped over but cannot express the second layer. This composite part is to test the function of the second bistable system and its compatibilty (with toxin encoded within) with the recombinase system.
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This composite part is to test the function of recombinase-toxin-bistable system.
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In our study,  we are aiming to design a bistable system to achieve zero basal expression in the absence of any inducer while ensuring constant transcriptional capacities and induction rates among promoters. The double bistable system combines small RNA-mediated inhibition of translation with the translational coupling of a repressor to the gene of interest. In our system, we have transcriptional repressors tetR expressed through the inducible promoter but translationally inhibited by the MicC sRNA1 respectively. Since RBS2 and RBS3 is directly inhibited by sRNA while they initiates the transcription of the two repressors, the gene of interest is translationally coupled to the repressor gene while three promoters which produces the inhibitory sRNA are targeted by their corresponding repressors.  Therefore, repressors and sRNA are mutually inhibitory. Within one single layer of the bistable system, the transcriptional factor is turned on, pBAD initiates the expression of tetR, which raises the concentration of tetR and thereby exerts greater inhibition on PR1 and therefore decreases the concentration of sRNA1. As sRNA1 is inhibited the inhibitory effect it exerts on tetR accordingly decreases, therefore the recombinase is expressed through the first layer, and vice versa. Nevertheless, given that the expression of LacI inhibits PR1, even if the recombinase is expressed PR1 can be flipped over but cannot express the second layer. This composite part is to test the function of the second bistable system and its compatibilty (with toxin encoded within) with the recombinase system.
  
  

Revision as of 06:59, 19 October 2019


AraC-pBAD-LacI Bistable System Kit

This composite part is to test the function of recombinase-toxin-bistable system.

In our study, we are aiming to design a bistable system to achieve zero basal expression in the absence of any inducer while ensuring constant transcriptional capacities and induction rates among promoters. The double bistable system combines small RNA-mediated inhibition of translation with the translational coupling of a repressor to the gene of interest. In our system, we have transcriptional repressors tetR expressed through the inducible promoter but translationally inhibited by the MicC sRNA1 respectively. Since RBS2 and RBS3 is directly inhibited by sRNA while they initiates the transcription of the two repressors, the gene of interest is translationally coupled to the repressor gene while three promoters which produces the inhibitory sRNA are targeted by their corresponding repressors. Therefore, repressors and sRNA are mutually inhibitory. Within one single layer of the bistable system, the transcriptional factor is turned on, pBAD initiates the expression of tetR, which raises the concentration of tetR and thereby exerts greater inhibition on PR1 and therefore decreases the concentration of sRNA1. As sRNA1 is inhibited the inhibitory effect it exerts on tetR accordingly decreases, therefore the recombinase is expressed through the first layer, and vice versa. Nevertheless, given that the expression of LacI inhibits PR1, even if the recombinase is expressed PR1 can be flipped over but cannot express the second layer. This composite part is to test the function of the second bistable system and its compatibilty (with toxin encoded within) with the recombinase system.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 2393
    Illegal SpeI site found at 2323
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 2393
    Illegal SpeI site found at 2323
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 2393
    Illegal BamHI site found at 1144
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 2393
    Illegal SpeI site found at 2323
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 2393
    Illegal SpeI site found at 2323
    Illegal AgeI site found at 979
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 2380
    Illegal BsaI.rc site found at 2370
    Illegal SapI site found at 961