Difference between revisions of "Part:BBa K3098017"
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<partinfo>BBa_K3098017 short</partinfo> | <partinfo>BBa_K3098017 short</partinfo> | ||
| − | This part is composed by the dCBM3a which is a improved dimer of the CBM3a ( form <html><a href="https://parts.igem.org/Part: | + | This part is composed by the dCBM3a which is a improved dimer of the CBM3a ( form <html><a href="https://parts.igem.org/Part:BBa_K2668000">BBa_K2668000</a></html> ) fused another monomer at the C-terminus and the monomeric streptavidin at the N-terminus. The dCBM3a domain has a higher affinity for the bacterial cellulose than CBM3a. And the monomeric strepvidin domain at N-terminus can bind to biotinylated compounds. The part can act as a adaptor which makes the binding of biotinylated functional compounds and the bacterial cellulose possible. |
Revision as of 17:42, 18 October 2019
Strep-dCBM3a
This part is composed by the dCBM3a which is a improved dimer of the CBM3a ( form BBa_K2668000 ) fused another monomer at the C-terminus and the monomeric streptavidin at the N-terminus. The dCBM3a domain has a higher affinity for the bacterial cellulose than CBM3a. And the monomeric strepvidin domain at N-terminus can bind to biotinylated compounds. The part can act as a adaptor which makes the binding of biotinylated functional compounds and the bacterial cellulose possible.
Usage and Biology
The part is composed of the dCBM3a domain and the monomeric streptavidin domain.The dCBM3a domain is the dimer of the CBM3a with three linkers peptide between the two CBM3as, at the N-terminus and the C-terminus of the domain. The linker region between two CBM3as contains 37 amino acids. The first five amino acids are from the N-endogenous linker, and the rest is from the C-endogenous linker. The N-terminus linker of the dCBM3a domain is the N-endogenous linker of the CBM3a. And the C-terminus of it is the same as the C-endogenous linker of the CBM3a. Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 1008
Illegal NgoMIV site found at 1026
Illegal NgoMIV site found at 1044
Illegal NgoMIV site found at 1596
Illegal NgoMIV site found at 1614
Illegal NgoMIV site found at 1632
Illegal AgeI site found at 19
Illegal AgeI site found at 85
Illegal AgeI site found at 361
Illegal AgeI site found at 790
Illegal AgeI site found at 993
Illegal AgeI site found at 1378
Illegal AgeI site found at 1581 - 1000COMPATIBLE WITH RFC[1000]
Result
1.Functional Detection of Cellulose Binding Domain
SDS-PAGE detection by using of the lysate of the engineered bacteria showed obvious target bands, among which the molecular weight of CBM3a with streptavidin was about 48kDa and that of dCBM3a with sterptavidin was about 89kDa.
We set three groups in this experiments dCBM3a, CBM3a and the negative control sfGFP. Then the samples will be mixed with bacteria cellulose homogenate.
The fluorescence residues were measured after incubation the bacterial lysate with BC membrane and washing of them. We found that the dCBM3a that we improved has higher affinity with bacteria cellulose than CBM3a.
2.Functional detection of Streptomycin Domain
Streptavidin can specifically bind to biotin, so biotinylated magnetic beads were used to detect the streptomycin domain of dCBM3a. After incubating the biotinylated magnetic beads with engineered bacteria lysate and washing , it was found that the target protein was successfully attached to the biotinylated magnetic beads by SDS-PAGE detection. We can see that in the supernatent after incubation has obviously lower amount of the dCBM3a proteins, while there were a lot of dCBM3a bound to the biotinylated magnetic beads.
