Difference between revisions of "Part:BBa K3147008"

Revision as of 14:37, 18 October 2019

mutant TEV (PH21) protease with TEV-cleavable maltose binding protein

I. Part BBa_K3147008 (MBP-TEVcs-TEVPH21) function

The 2019 Montpellier iGEM team made this construction in order to be able to compare the basal activity of the TEV protease (BBa_ K1319004) with the mutant TEV protease TEVPE21 [3]. A modified TEV cut-off site was added between the MBP and the protease. MBP increases the solubility of the fusion protein [1], preventing the aggregation of the protein of interest. This stabilizes the expression and the sequence of the produced MBP does not have a signal peptide, which allows the protein to remain in the cytosol. The TEV cutting site allows self-cleavage of MBP from TEV once the protein is produced [2].

Figure 1 : Construct Design: MBP-TEVcs-TEVPH21 with modified TEV cutting site. The objective of the construction is to be able to compare the activity of a TEV protease with this mutant TEV protease.

II. Proof of function

The experimental approach that has been used to test the protease activity is to compare the fluorescence restoration rate of sfGFP compared to MBP-TEV and MBP-TEVPEH21. The construction was cloned by Gibson Assembly in a pOUT18 backbone under the control of a TET ON promoter, in order to control its expression. The TEV cutting site used is the mutated site: ENLYFE/G this mutation allows theoretically the mutant TEV to better cleave this sequence according to this source [3].

Figure 2: MBP-TEVPH21 reporter gene in its backbone pOUT18.

In this experiment, basal controls of maximum and minimum fluorescence of the reporter genes were used. Fluorescence data are normalized by fluorescence divided by optical density. To carry out these experiments, E. coli from the NEB10β strain were co-transformed using both constructions. The protease is expressed by inducing the TET promoter with 50 ng/mL of aTc (anhydrotetracycline).

Figure 3: Comparison of the activity of TEVPH21 to the TEV WT by measuring the fluorescence of a reporter that needs to be cutted from a proteolysis tag

We can see that the TEVPH21 is more efficient than the TEV WT. We think it’s because our TEV WT isn’t the one in the article where we found this mutant.

Reference

[1] Raran-Kurussi, Sreejith, et David S. Waugh. 2012. « The Ability to Enhance the Solubility of Its Fusion Partners Is an Intrinsic Property of Maltose-Binding Protein but Their Folding Is Either Spontaneous or Chaperone-Mediated » éd. Bostjan Kobe. PLoS ONE 7(11): e49589.

[2] Shih, Y.-P. 2005. « Self-Cleavage of Fusion Protein in Vivo Using TEV Protease to Yield Native Protein ». Protein Science 14(4): 936‑41.

[3] Yi, L. et al. 2013. « Engineering of TEV Protease Variants by Yeast ER Sequestration Screening (YESS) of Combinatorial Libraries ». Proceedings of the National Academy of Sciences 110(18): 7229‑34 Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
INCOMPATIBLE WITH RFC[1000]
Illegal BsaI site found at 77
Illegal SapI.rc site found at 1868

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K3147008 short</partinfo>
-===I : parts BBa_K3147006 (MBP-TEVcs-TEVPH21) function===
+===I. Part BBa_K3147008 (MBP-TEVcs-TEVPH21) function===
+The 2019 Montpellier iGEM team made this construction in order to be able to compare the basal activity of the TEV protease (BBa_ K1319004) with the mutant TEV protease TEVPE21 [3]. A modified TEV cut-off site was added between the MBP and the protease. MBP increases the solubility of the fusion protein [1], preventing the aggregation of the protein of interest. This stabilizes the expression and the sequence of the produced MBP does not have a signal peptide, which allows the protein to remain in the cytosol. The TEV cutting site allows self-cleavage of MBP from TEV once the protein is produced [2].
-The Montpellier 2019 team made this construction in order to be able to compare the basal activity of the TEV protease (BBa_ K1319004) with the mutant TEV protease called TEVPH21, we were able to find the mutant TEV sequences in this article [3].
-This construction was used as a control within the Karma project presented by the iGEM Montpellier 2019 team. It produces a mutant TEV fused to an MBP with, in between a modified TEV cutting site to increase the mutant's activity. MBP increases the solubility of the fusion protein [1] preventing the aggregation of the protein of interest, this stabilizes expression, the sequence of the produced MBP does not have a signal peptide which keeps the protein in the cytosol. The TEV cutting site allows to separate MBP from TEV once the protein is produced, indeed the TEV protease is capable of self-cleavage to remove MBP[2].
   <div align="center">[[File:designK3147008.png|650px]]</div>
@@ Line 20: / Line 20: @@
   <div align="center"><b>Figure 2</b>: MBP-TEVPH21 reporter gene in its backbone pOUT18.</div>
-In this experiment, basal controls of maximum and minimum fluorescence of the reporter genes were used. Fluorescence data are normalized by fluorescence divided by optical density. To carry out these experiments, E. coli from the NEB10β strain were co-transformed using both constructions.  The protease is expressed by inducing the TET promoter with 50ng/mL of aTc (anhydrotetracycline).
+In this experiment, basal controls of maximum and minimum fluorescence of the reporter genes were used. Fluorescence data are normalized by fluorescence divided by optical density. To carry out these experiments, E. coli from the NEB10β strain were co-transformed using both constructions.  The protease is expressed by inducing the TET promoter with 50 ng/mL of aTc (anhydrotetracycline).
   <div align="center">[[File:resultK3147008.png|500px]]</div>
-  <div align="center"><b>Figure 3</b> : Comparison of the activity of TEVPH21 to the TEV WT by measuring the fluorescence of a reporter that needs to be cutted from a proteolysis tag</div>
+  <div align="center"><b>Figure 3</b>: Comparison of the activity of TEVPH21 to the TEV WT by measuring the fluorescence of a reporter that needs to be cutted from a proteolysis tag</div>
 We can see that the TEVPH21 is more efficient than the TEV WT. We think it’s because our TEV WT isn’t the one in the article where we found this mutant.