Difference between revisions of "Part:BBa K143020"

 
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GsiB is an endogenous ribosome binding site (RBS) from ''B.subtilis''. The sequence of the  gsiB ribosome binding site is '''AAAGGAGG''' which is complementary to the sequence '''UUUCCUCC''' from the 3' region of the 16s rRNA from ''B.subtilis''. Previous research showed that the predicted binding energy of the 16s rRNA to the RBS is -9.3kcal.
 
GsiB is an endogenous ribosome binding site (RBS) from ''B.subtilis''. The sequence of the  gsiB ribosome binding site is '''AAAGGAGG''' which is complementary to the sequence '''UUUCCUCC''' from the 3' region of the 16s rRNA from ''B.subtilis''. Previous research showed that the predicted binding energy of the 16s rRNA to the RBS is -9.3kcal.
  
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'''To get the higest level of translation from this RBS it must be connected to a coding region preceeded by a coding region prefix<cite>#1</cite>. A standard prefix will increase the distance between the RBS and the start codon, reducing translational efficiency'''.
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<br>
  
 
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<span class='h3bb'>Sequence and Features</span>
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<span class='h3bb'><big>'''Sequence and Features'''</big></span>
 
<partinfo>BBa_K143020 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K143020 SequenceAndFeatures</partinfo>
  
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===References===
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<biblio>
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#1 https://parts.igem.org/Assembly:RBS-CDS_issues
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</biblio>
  
 
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Revision as of 11:41, 18 September 2008

GsiB ribosome binding site (RBS) for B. subtilis

GsiB is an endogenous ribosome binding site from B.subtilis. The sequence of the gsiB ribosome binding site is AAAGGAGG which is complementary to the sequence UUUCCUCC from the 3' region of the 16s rRNA from B.subtilis. GsiB is an endogenous ribosome binding site (RBS) from B.subtilis. The sequence of the gsiB ribosome binding site is AAAGGAGG which is complementary to the sequence UUUCCUCC from the 3' region of the 16s rRNA from B.subtilis. Previous research showed that the predicted binding energy of the 16s rRNA to the RBS is -9.3kcal.


To get the higest level of translation from this RBS it must be connected to a coding region preceeded by a coding region prefix#1. A standard prefix will increase the distance between the RBS and the start codon, reducing translational efficiency.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

<biblio>

  1. 1 https://parts.igem.org/Assembly:RBS-CDS_issues

</biblio>