Difference between revisions of "Part:BBa K3034005"
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<partinfo>BBa_K3034005 short</partinfo>
 
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<!-- Add more about the biology of this part here
 
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===Usage and Biology===
 
===Usage and Biology===
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K3034005 SequenceAndFeatures</partinfo>
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==Contribution ==
 
==Contribution ==
 
*'''Group:''' [http://2019.igem.org/Team:UESTC-China iGEM Team UESTC-China 2019]
 
*'''Group:''' [http://2019.igem.org/Team:UESTC-China iGEM Team UESTC-China 2019]
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The experimental group used CD072 of DH5α.
 
The experimental group used CD072 of DH5α.
 
The control group used DH5α blank carrier bacteria.
 
The control group used DH5α blank carrier bacteria.
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1. A blank vector and a single clone of CD072 were taken from the crossed plates, and 5 ml of LB and 5 μl of ampicillin were added to a 12 ml BD tube, and shaken for 11 hours.
 
1. A blank vector and a single clone of CD072 were taken from the crossed plates, and 5 ml of LB and 5 μl of ampicillin were added to a 12 ml BD tube, and shaken for 11 hours.
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2. Take 800μl from yesterday's bacteria and prepare a 15ml system  (100ml small conical flask), cultivate the bacteria to the logarithmic growth phase（1.5h）.
 
2. Take 800μl from yesterday's bacteria and prepare a 15ml system  (100ml small conical flask), cultivate the bacteria to the logarithmic growth phase（1.5h）.
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3. separately add CIP to prepare a system having a CIP concentration of 0, 0.1, 1, 6, 10 μg/ml.
 
3. separately add CIP to prepare a system having a CIP concentration of 0, 0.1, 1, 6, 10 μg/ml.
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4. Detect OD600 and green fluorescence after 0h, 2h,4h,6h by a multi-function microplate reader.
 
4. Detect OD600 and green fluorescence after 0h, 2h,4h,6h by a multi-function microplate reader.
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• OD600 detection method:  
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        in 96-well plate, 3 duplicate holes, minus LB blank
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• OD600 detection method: in 96-well plate, 3 duplicate holes, minus LB blank.
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• Green fluorescence intensity detection method:  
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        At each time point, 1.5ml of bacterial liquid was taken in a light-proof tube,centrifuged at 12000rpm for 20 minutes, washed once with distilled water, and resuspended once. Add 96-well plate 200μl, excitation wavelength at 475nm, emission wavelength520nm.
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• Green fluorescence intensity detection method: At each time point, 1.5ml of bacterial liquid was taken in a light-proof tube,centrifuged at 12000rpm for 20 minutes, washed once with distilled water, and resuspended once. Add 96-well plate 200μl, excitation wavelength at 475nm, emission wavelength520nm.
  
  
 
====Detection of Green fluorescence intensity—Result ====
 
====Detection of Green fluorescence intensity—Result ====
  
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  [[File:T--UESTC-China--PtisAB.png|500px|thumb|center|'''Fig. 2''' Fluorescence in unit OD
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  [[File:T--UESTC-China--PtisAB.png|800px|thumb|center|'''Fig. 2''' Fluorescence in unit OD
 
CD072（DH5α）carries piGEM2019-Module001, which obtain PtisAB, GFP, Qnrs and AmpR. Control group（DH5α）carries a plasmid which only have AmpR. Cells were exposed to 0 0.1 1 6 10ug/ml CIP in exponential phase.
 
CD072（DH5α）carries piGEM2019-Module001, which obtain PtisAB, GFP, Qnrs and AmpR. Control group（DH5α）carries a plasmid which only have AmpR. Cells were exposed to 0 0.1 1 6 10ug/ml CIP in exponential phase.
 
Fold induction is GFP fluorescence after 2/4/6 h of exposure normalized to initial fluorescence.This graph is a representative of three independent experiments with similar results; error bars indicate the standard error.]]
 
Fold induction is GFP fluorescence after 2/4/6 h of exposure normalized to initial fluorescence.This graph is a representative of three independent experiments with similar results; error bars indicate the standard error.]]
  
  
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Compared CD072 group with control group, we can see that the the fluorescence intensity in CD072 is significantly stronger than control group. And for CD072 group, we can see PtisAB responds differently to CIP at different concentrations, among them, 1ug/ml is the most appropriate response concentration for PtisAB.
+
  Compared CD072 group with control group, we can see that the the fluorescence intensity in CD072 is significantly stronger than control group. And for CD072 group, we can see PtisAB responds differently to CIP at different concentrations, among them, 1ug/ml is the most appropriate response concentration for PtisAB.
  
 
====References====
 
====References====
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===Functional Parameters===
 
===Functional Parameters===
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<partinfo>BBa_K3034005 SequenceAndFeatures</partinfo>
 
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<span class='h3bb'>Sequence and Features</span>
 
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<!-- Uncomment this to enable Functional Parameter display  
 
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Revision as of 10:12, 3 October 2019

PtisAB

23

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Contribution

  • Group: [http://2019.igem.org/Team:UESTC-China iGEM Team UESTC-China 2019]
  • Author: Yubing Zhou, Jiayi Lu
  • Summary: PtisAB is a promoter which can be induced by ciprofloxacin(CIP) through SOS response, and the expression of it varies with different concentrations of CIP. This part is responsible for starting to express subsequent genes once it sensed CIP.

Characterization from iGEM19-UESTC-China

Experimental principal

Ciprofloxacin can cause the SOS reaction of the bacteria, and the SOS reaction activates the RecA enzyme. When the RecA enzyme is activated, the lexA repressor is cleared, whereby the promoter starts to start and express the downstream gene. (缺图1) As the schematic of the piGEM2019-Module001 shown above(Fig.1), when pTisAB senses ciprofloxacin, subsequent genes will express, one of them is eGFP. By detecting the fluorescence intensity of eGFP, the expression of PtisAB can be reflected.

Methods

Fixed strain: The experimental group used CD072 of DH5α. The control group used DH5α blank carrier bacteria.

1. A blank vector and a single clone of CD072 were taken from the crossed plates, and 5 ml of LB and 5 μl of ampicillin were added to a 12 ml BD tube, and shaken for 11 hours.

2. Take 800μl from yesterday's bacteria and prepare a 15ml system (100ml small conical flask), cultivate the bacteria to the logarithmic growth phase（1.5h）.

3. separately add CIP to prepare a system having a CIP concentration of 0, 0.1, 1, 6, 10 μg/ml.

4. Detect OD600 and green fluorescence after 0h, 2h,4h,6h by a multi-function microplate reader.

• OD600 detection method: in 96-well plate, 3 duplicate holes, minus LB blank.

• Green fluorescence intensity detection method: At each time point, 1.5ml of bacterial liquid was taken in a light-proof tube,centrifuged at 12000rpm for 20 minutes, washed once with distilled water, and resuspended once. Add 96-well plate 200μl, excitation wavelength at 475nm, emission wavelength520nm.


Detection of Green fluorescence intensity—Result

Fig. 2 Fluorescence in unit OD CD072（DH5α）carries piGEM2019-Module001, which obtain PtisAB, GFP, Qnrs and AmpR. Control group（DH5α）carries a plasmid which only have AmpR. Cells were exposed to 0 0.1 1 6 10ug/ml CIP in exponential phase. Fold induction is GFP fluorescence after 2/4/6 h of exposure normalized to initial fluorescence.This graph is a representative of three independent experiments with similar results; error bars indicate the standard error.


 Compared CD072 group with control group, we can see that the the fluorescence intensity in CD072 is significantly stronger than control group. And for CD072 group, we can see PtisAB responds differently to CIP at different concentrations, among them, 1ug/ml is the most appropriate response concentration for PtisAB.

References

[1]Vogel J, Argaman L, Wagner EG, Altuvia S: The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Current biology : CB 2004, 14(24):2271-2276.


[2]Dörr T, Vulić M, Lewis K: Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli. PLoS Biol 2010, 8(2):e1000317-e1000317.