Difference between revisions of "Part:BBa K2871000:Design"

(Design Notes)
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===Design Notes===
 
===Design Notes===
  
The amino acid sequence of the signal is obtained from Charpentier & Oswald (2004) paper. The DNA sequence is synthesized by IDT. The glycine-serine linker is added by PCR to decrease folding interaction with a target protein.
+
The amino acid sequence of the signal is obtained from Charpentier & Oswald (2004) paper. The DNA sequence is synthesized by IDT. The short glycine-serine linker (GGSGSGSG) is added by PCR to decrease folding interaction with a target protein. As this part was designed to be an N-terminal fusion domain, the RFC25 Biobrick suffix sequence is added to the standard RFC10 suffix, which allows in-frame fusion with other RFC25 protein parts. 
  
 
===Source===
 
===Source===
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===References===
 
===References===
Charpentier & Oswald, 2004. journal of baceteriology. 'Identification of the Secretion and Translocation Domain of the Enteropathogenic and Enterohemorrhagic Escherichia coli Effector Cif, Using TEM-1 β-Lactamase as a New Fluorescence-Based Reporter' DOI: 10.1128/JB.186.16.5486-5495.2004  
+
Charpentier & Oswald, 2004. Journal of Bacteriology. 'Identification of the Secretion and Translocation Domain of the Enteropathogenic and Enterohemorrhagic Escherichia coli Effector Cif, Using TEM-1 β-Lactamase as a New Fluorescence-Based Reporter' DOI: 10.1128/JB.186.16.5486-5495.2004  
 
https://jb.asm.org/content/186/16/5486
 
https://jb.asm.org/content/186/16/5486

Revision as of 03:19, 18 October 2018


Map20, T3SS export signal peptide from Map gene


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 85
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The amino acid sequence of the signal is obtained from Charpentier & Oswald (2004) paper. The DNA sequence is synthesized by IDT. The short glycine-serine linker (GGSGSGSG) is added by PCR to decrease folding interaction with a target protein. As this part was designed to be an N-terminal fusion domain, the RFC25 Biobrick suffix sequence is added to the standard RFC10 suffix, which allows in-frame fusion with other RFC25 protein parts.

Source

Synthetic sequence deduced from Amino acid Sequence from the Enteropathogenic E. coli strain E22. Described in the paper Charpentier & Oswald, 2004.

References

Charpentier & Oswald, 2004. Journal of Bacteriology. 'Identification of the Secretion and Translocation Domain of the Enteropathogenic and Enterohemorrhagic Escherichia coli Effector Cif, Using TEM-1 β-Lactamase as a New Fluorescence-Based Reporter' DOI: 10.1128/JB.186.16.5486-5495.2004 https://jb.asm.org/content/186/16/5486