Difference between revisions of "Part:BBa K2839000"

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Contents:
 
Contents:
[[Frog#Locomotion]]
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# One Short Description
Biology and Functionality
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# Two Biology and Functionality
Usage in our Project
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#Tree Usage in our Project
Illegal Sites Removal
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#Four Illegal Sites Removal
Cloning Strategy  
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#Five Cloning Strategy  
Results, Characterization
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#Six Results, Characterization
Potential Applications
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#Seven Potential Applications
References
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#Eight References
  
 
===1.Short description:===
 
===1.Short description:===
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This part consists of a TAL Effector (TALEsp1), a TALEsp1-stabilized promoter (pupsp1) and a fluorescent marker (sfGFP).  
 
This part consists of a TAL Effector (TALEsp1), a TALEsp1-stabilized promoter (pupsp1) and a fluorescent marker (sfGFP).  
 
This part was originally designed by Thomas Hale Segall-Shapiro (Shapiro et al) and iGEM Thessaloniki modified it to exclude 2 PstI recognition sites, thus making it RFC[10] compatible .It can be used to achieve stabilised expression of the sfGFP marker, decoupled from gene/plasmid copy number.
 
This part was originally designed by Thomas Hale Segall-Shapiro (Shapiro et al) and iGEM Thessaloniki modified it to exclude 2 PstI recognition sites, thus making it RFC[10] compatible .It can be used to achieve stabilised expression of the sfGFP marker, decoupled from gene/plasmid copy number.
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2.Biology and Functionality:
  
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Transcription Activator- Like Effectors (TAL Effectors or TALEs) are DNA binding proteins that are naturally expressed by members of the Xanthomonas genus when infecting plants. They contain a central repeat domain which defines their binding to specific promoter sequences in the plant genome, activating transcription and facilitating the bacterial infection.
 +
Because of their modular architecture and their ability to recognise specific promoter sequences, TALEs are widely used in genome editing when precise targeting is required. They can be programmed/designed to tightly bind to target sites operating as transcription factors by either activating or repressing transcription initiation or elongation. and either activate or repress transcription.(1)
  
Basic Part Name
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*DNA binding proteins
Registry link
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*Modular Architecture
Type
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*Precise Binding with negligible off target effects
Function
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L2S2P21
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BBa_K1401006
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Terminator
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Terminates Transcription
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PT7A1w2
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BBa_K2839021
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Promoter
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Transcription Initiation
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SarJ
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BBa_K2839022
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Insulator
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RBSsp1
 
BBa_K2753036
 
RBS
 
Recognized by ribosome and initiates translation
 
TALEsp1
 
BBa_K2839027
 
Coding Sequence
 
Binds to the PUPsp1 promoter and inhibits RNAP binding
 
ECK-12 0029600
 
BBa_K2486006
 
Terminator
 
Terminates Transcription
 
PUPsp1
 
BBa_K2839025
 
Promoter
 
Transcription Initiation
 
RiboJ
 
BBa_K1679042
 
Insulator
 
 
 
B0032
 
BBa_B0032
 
RBS
 
Ribosome Binding Site
 
sfGFP
 
BBa_K1893032
 
Coding Sequence
 
Fluorescence Marker
 
B0015
 
BBa_B0015
 
Terminator
 
Terminates Transcription
 
  
  

Revision as of 13:32, 17 October 2018


TALEsp1-Pupsp1 stabilized promoter


Contents:

  1. One Short Description
  2. Two Biology and Functionality
  3. Tree Usage in our Project
  4. Four Illegal Sites Removal
  5. Five Cloning Strategy
  6. Six Results, Characterization
  7. Seven Potential Applications
  8. Eight References

1.Short description:

This part consists of a TAL Effector (TALEsp1), a TALEsp1-stabilized promoter (pupsp1) and a fluorescent marker (sfGFP). This part was originally designed by Thomas Hale Segall-Shapiro (Shapiro et al) and iGEM Thessaloniki modified it to exclude 2 PstI recognition sites, thus making it RFC[10] compatible .It can be used to achieve stabilised expression of the sfGFP marker, decoupled from gene/plasmid copy number. 2.Biology and Functionality:

Transcription Activator- Like Effectors (TAL Effectors or TALEs) are DNA binding proteins that are naturally expressed by members of the Xanthomonas genus when infecting plants. They contain a central repeat domain which defines their binding to specific promoter sequences in the plant genome, activating transcription and facilitating the bacterial infection. Because of their modular architecture and their ability to recognise specific promoter sequences, TALEs are widely used in genome editing when precise targeting is required. They can be programmed/designed to tightly bind to target sites operating as transcription factors by either activating or repressing transcription initiation or elongation. and either activate or repress transcription.(1)

  • DNA binding proteins
  • Modular Architecture
  • Precise Binding with negligible off target effects




Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 2734
    Illegal XhoI site found at 3677
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1707
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 23