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===Biology===
 
===Biology===
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Different transcription factors interaction with multiple binding sites
 
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Promotor operator numbers can have an impact on tuning output
 
  
 
=====Synthetic promotor operators regulated by artificial zinc finger-based transcription factors=====
 
=====Synthetic promotor operators regulated by artificial zinc finger-based transcription factors=====
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[[File:ZF3.jpg|none|240px|thumb|Khalil AS et al stated:''Tuning up output strength by increasing ZF operator number in synthetic promoter (sTF43-8).'']]
 
[[File:ZF3.jpg|none|240px|thumb|Khalil AS et al stated:''Tuning up output strength by increasing ZF operator number in synthetic promoter (sTF43-8).'']]
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===Characterization===
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=====It works as we designed =====
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[[File:model.png|none|480px|thumb|'''Fig.1 Flow cytometry results of different transcription factors interaction with multiple binding sites.''']]
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Thus it is verified by experiment that promoter operator numbers can have an impact on tuning output.
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[[File:NIMPLY.png|none|480px|thumb|'''Fig.2 NIMPLY gate constructed using 8*ZF21.16-minCMV-2*ZF43.8 or 8*ZF43.8-minCMV-2*ZF21.16.''']]
  
 
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Revision as of 08:41, 17 October 2018

8*ZF21.16-minCMV-2*ZF43.8

This part is one of the response elements of our amplifier, also executing the combiner function. 8*ZF21.16 binding sites and 2*ZF43.8 binding sites (Part:BBa_K2549051) can bind to different zinc finger-based transcription activator ZF21.16-VP64 (Part:BBa_K2549023) and zinc finger-based repressor ZF43.8-KRAB (Part:BBa_K2446041), respectively, with high orthogonality. Minimal CMV (Part:BBa_K2549049) is a promotor providing very low basal expression and high maximal expression after induction. This part was designed to construct our NIMPLY logic gate and test our multiple binding sites amplifier model[1].

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Biology

Synthetic promotor operators regulated by artificial zinc finger-based transcription factors

Khalil AS et al have reported several synthetic promotor operators which can interact with artificial zinc finger-based transcription factors with high specificity and high orthogonality[2].

Khalil AS et al stated:sTFs constructed from OPEN-engineered ZFs are orthogonal to one another. sTF43-8 activated noncognate Promoter21-16 due to the fortuitous creation of a sequence that is significantly similar to the binding sequence of 43-8, when the downstream BamHI restriction site is considered.
Khalil AS et al stated:Tuning up output strength by increasing ZF operator number in synthetic promoter (sTF43-8).

Characterization

It works as we designed
Fig.1 Flow cytometry results of different transcription factors interaction with multiple binding sites.

Thus it is verified by experiment that promoter operator numbers can have an impact on tuning output.

File:NIMPLY.png
Fig.2 NIMPLY gate constructed using 8*ZF21.16-minCMV-2*ZF43.8 or 8*ZF43.8-minCMV-2*ZF21.16.


References

  1. ↑ http://2018.igem.org/Team:Fudan/Model#Transcriptional_Amplifer
  2. ↑ A synthetic biology framework for programming eukaryotic transcription functions. Khalil AS, Lu TK, Bashor CJ, ..., Joung JK, Collins JJ. Cell, 2012 Aug;150(3):647-58 PMID: 22863014; DOI: 10.1016/j.cell.2012.05.045